Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.8e-242 841.3 488 100.0
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 6.6e-194 681.0 497 82.7
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 9.0e-183 644.0 488 81.6
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.5e-177 626.7 514 76.3
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.5e-177 625.9 498 80.3
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.1e-172 610.5 512 75.2
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.5e-149 531.6 499 72.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-133 481.1 470 67.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 4.7e-131 472.2 496 65.7
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 2.0e-129 466.8 496 66.5
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 4.4e-129 465.7 488 61.3
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.7e-128 463.8 493 62.5
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 3.1e-127 459.5 495 61.4
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.6e-126 457.2 493 61.5
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 7.7e-126 454.9 488 64.1
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 8.0e-123 444.9 491 63.7
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.4e-122 444.1 469 64.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 5.7e-121 438.7 488 62.7
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.3e-120 437.6 488 62.7
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 3.1e-82 310.1 530 45.3
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 5.8e-81 305.8 519 45.9
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.9e-80 303.5 527 45.2
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.4e-79 301.2 528 46.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.4e-79 300.4 518 41.9
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 3.2e-79 300.1 518 41.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.3e-77 293.9 485 45.2
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.8e-75 287.0 504 40.7
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.0e-74 283.1 526 40.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.7e-72 277.7 507 41.6
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.2e-72 277.3 522 43.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 6.4e-72 275.8 517 39.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.2e-70 271.6 529 39.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.6e-70 271.2 525 40.4
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.6e-70 269.6 513 41.5
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.3e-69 267.3 519 43.5
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 4.3e-68 263.1 524 44.1
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.4e-66 257.3 500 39.6
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 6.9e-66 255.8 516 42.4
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 6.9e-66 255.8 523 38.0
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 9.0e-66 255.4 517 39.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.6e-65 253.8 442 42.1
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.7e-64 251.1 523 38.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.2e-64 250.8 525 37.7
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 8.4e-64 248.8 544 39.7
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.9e-63 247.7 514 39.7
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.6e-62 244.6 441 44.2
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.6e-62 244.6 512 40.0
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 6.0e-62 242.7 513 40.0
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.8e-61 241.1 449 43.2
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.1e-61 239.6 524 39.1
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.1e-61 239.6 528 38.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.7e-61 239.2 392 43.4
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.7e-61 239.2 505 41.0
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 6.7e-61 239.2 515 36.1
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.7e-61 238.8 505 39.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.9e-60 237.7 519 37.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 9.6e-60 235.3 513 37.0
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.6e-59 234.6 546 36.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.8e-59 233.0 523 38.0
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 8.2e-59 232.3 528 38.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.1e-58 231.9 492 38.0
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.1e-58 231.9 530 38.5
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.5e-57 228.0 528 36.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.0e-57 227.6 507 37.7
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.6e-57 227.3 502 36.7
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 5.9e-57 226.1 521 38.4
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 7.6e-57 225.7 506 36.2
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.0e-56 225.3 526 36.9
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.7e-56 224.6 506 36.4
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.5e-55 220.7 514 38.3
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.6e-54 218.0 521 35.9
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-54 217.6 555 36.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.6e-54 216.9 395 39.0
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.6e-54 216.9 412 40.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 6.1e-54 216.1 468 41.9
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 7.9e-54 215.7 525 35.4
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.0e-53 215.3 491 35.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.0e-53 215.3 447 36.2
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 3.0e-53 213.8 465 37.6
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-53 213.8 486 40.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.1e-53 213.0 476 38.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 5.1e-53 213.0 511 35.4
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 8.7e-53 212.2 448 42.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.6e-51 208.0 361 48.2
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.6e-51 208.0 472 40.5
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.2e-51 207.6 455 38.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.2e-51 207.6 455 38.7
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.2e-51 205.7 549 35.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-50 204.9 454 39.6
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.5e-49 201.4 521 39.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 2.2e-48 197.6 503 38.4
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.5e-48 196.1 421 38.2
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 8.5e-48 195.7 400 40.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 1.9e-47 194.5 422 39.8
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.1e-46 191.0 515 35.3
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.7e-46 190.7 490 37.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.7e-46 190.7 504 34.7
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.6e-46 189.9 487 38.8
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.0e-45 188.7 561 32.1
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 4.4e-44 183.3 501 33.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 2.2e-43 181.0 483 32.9
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.8e-43 180.6 499 32.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.5e-41 174.9 391 35.5
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.6e-41 174.1 397 34.8
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.6e-41 174.1 435 35.2
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.8e-40 170.2 470 39.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.5e-40 169.5 293 42.3
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.9e-39 167.9 407 35.6
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.2e-39 167.2 441 34.7
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 5.5e-39 166.4 423 33.6
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-38 165.2 515 32.0
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.1e-36 158.7 318 38.1
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 3.3e-36 157.1 533 31.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 7.4e-36 156.0 507 32.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.2e-33 148.7 298 38.9
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.5e-31 141.0 498 29.7
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 2.1e-30 137.9 317 42.3
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 2.1e-30 137.9 498 31.5
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 6.1e-30 136.3 382 32.5
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.6e-28 131.0 297 42.8
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 8.2e-27 125.9 546 28.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.6e-25 121.7 447 26.6
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.7e-25 120.9 332 32.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.5e-25 120.2 209 40.7
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.9e-25 119.8 309 35.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 2.2e-24 117.9 333 31.8
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.9e-23 114.8 257 39.7
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.1e-22 109.8 204 42.6
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.3e-16 92.0 203 45.8
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.5e-16 89.7 128 44.5
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.5e-15 87.8 50 88.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.4e-13 82.0 271 31.7
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.3e-13 81.3 182 34.1
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 3.0e-13 80.9 122 45.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.7e-11 75.1 57 59.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.1e-10 70.9 180 27.8
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.1e-10 70.9 120 42.5
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.0e-08 65.9 177 45.8
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.0e-08 63.5 51 56.9
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.1e-06 58.2 286 27.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.7e-06 57.0 48 52.1


User provided reference genes

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