Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 0.0e+00 1252.7 667 100.0
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 0.0e+00 1213.4 667 96.0
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 0.0e+00 1149.4 649 91.5
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 0.0e+00 1149.4 647 91.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 0.0e+00 1138.3 647 90.9
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 0.0e+00 1135.6 647 90.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 0.0e+00 1125.9 665 89.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1124.4 647 90.0
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 0.0e+00 1117.8 647 89.5
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 0.0e+00 1117.8 647 89.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1096.6 636 89.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 0.0e+00 1090.5 636 88.8
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.3e-306 1055.0 651 84.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 8.3e-264 913.7 654 73.1
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.4e-231 805.8 648 63.9
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 4.6e-230 801.6 651 64.4
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 7.9e-230 800.8 660 63.6
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.5e-228 796.6 650 63.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 5.3e-226 788.1 656 62.3
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.9e-226 787.7 653 61.7
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.0e-224 783.9 644 63.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.2e-224 782.7 651 62.2
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 3.8e-224 781.9 654 62.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.5e-224 781.2 654 62.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 7.1e-223 777.7 660 60.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.3e-223 777.3 658 62.5
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.0e-221 773.9 662 61.6
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.3e-220 768.5 655 60.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 7.4e-220 767.7 655 61.7
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 7.4e-220 767.7 688 59.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.6e-219 766.5 654 61.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.1e-219 766.1 643 60.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.8e-219 765.8 644 62.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.4e-218 762.7 688 58.9
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.2e-217 760.4 635 62.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.2e-217 760.4 642 61.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 3.4e-217 758.8 642 61.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.5e-217 758.4 641 61.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.8e-217 758.1 639 61.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-216 756.5 647 60.9
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.2e-216 756.1 643 59.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.5e-215 752.7 647 60.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.5e-215 752.7 642 60.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.5e-215 752.7 623 61.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.5e-215 751.5 647 61.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.1e-215 751.1 647 60.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 9.3e-215 750.7 647 60.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.9e-214 747.7 642 59.5
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.0e-213 747.3 655 61.2
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 3.9e-213 745.3 643 58.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-213 744.6 642 58.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.1e-212 743.8 648 58.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-212 743.0 642 58.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 3.3e-212 742.3 647 58.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.4e-212 741.1 634 61.0
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.6e-211 740.0 651 59.8
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.6e-211 740.0 648 59.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.6e-211 740.0 643 59.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 6.3e-211 738.0 643 58.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.2e-209 733.8 645 58.0
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 7.7e-209 731.1 643 58.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-208 730.3 643 58.6
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-207 726.5 642 57.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-207 726.1 642 57.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-206 723.4 643 59.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.9e-205 718.8 641 57.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.1e-205 718.4 652 57.5
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.5e-204 716.1 652 57.2
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.3e-204 715.3 674 57.7
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 8.2e-203 711.1 646 57.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 9.1e-202 707.6 643 57.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.2e-200 703.0 640 56.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.9e-200 702.6 656 56.2
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.3e-197 693.0 659 56.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.0e-197 692.6 659 56.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 3.9e-197 692.2 673 53.2
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.4e-196 688.7 634 55.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 9.7e-196 687.6 655 55.7
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.3e-195 687.2 640 55.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 8.2e-195 684.5 647 57.0
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.4e-194 682.9 643 54.1
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.3e-194 681.8 641 56.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-193 679.9 647 57.5
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.5e-193 679.1 610 58.9
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.5e-193 678.7 664 55.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 5.9e-193 678.3 654 56.1
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.7e-192 676.8 636 54.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.5e-192 674.5 648 53.2
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-191 672.5 590 57.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.7e-189 664.8 638 53.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.8e-187 659.4 701 52.4
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.5e-185 652.1 553 62.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.6e-182 643.7 537 61.3
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.0e-181 641.0 654 52.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.0e-181 639.0 648 51.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 6.3e-179 631.7 643 53.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.7e-177 626.3 648 50.8
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 4.5e-177 625.5 543 58.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 2.4e-170 603.2 588 57.3
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 5.9e-169 598.6 650 51.1
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.6e-164 583.2 650 50.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 4.4e-164 582.4 532 55.8
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.6e-158 562.8 648 47.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.4e-157 560.8 577 53.6
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.2e-157 558.9 538 53.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 6.8e-157 558.5 659 47.5
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.5e-156 557.4 644 46.6
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.9e-154 550.4 551 54.3
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.6e-151 538.9 513 55.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.4e-148 529.6 645 45.9
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.9e-139 500.0 612 52.1
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.7e-134 482.6 639 43.2
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.4e-133 480.3 642 42.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.6e-132 476.9 631 43.4
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.4e-132 476.5 639 42.9
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 3.9e-128 463.0 643 40.1
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 6.2e-126 455.7 434 56.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.2e-123 447.2 641 41.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.4e-123 445.7 400 58.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 7.9e-121 438.7 397 58.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-114 418.3 383 64.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.5e-105 386.7 390 51.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 9.6e-103 378.6 612 44.6
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-88 331.6 306 64.4
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 9.4e-82 308.9 311 60.8
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.3e-72 277.7 245 57.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 9.7e-71 272.3 251 56.2
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.1e-69 265.8 201 66.7
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 5.9e-68 263.1 432 38.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-66 258.1 434 38.5
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.7e-65 254.2 257 58.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.0e-64 252.3 188 70.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.1e-50 205.7 234 47.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-45 187.6 210 49.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.9e-37 161.8 170 48.8
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.0e-36 158.3 253 39.1
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-32 144.1 181 45.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 5.2e-32 143.7 604 25.3
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-31 142.5 133 55.6
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.4e-31 141.0 237 40.1
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 2.2e-30 138.3 108 63.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 6.6e-27 126.7 98 62.2
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.5e-26 122.9 110 58.2
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 1.5e-23 115.5 74 81.1
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.4e-21 108.2 96 58.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 7.1e-21 106.7 91 63.7
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 5.1e-19 100.5 75 68.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.6e-18 97.1 132 43.2
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.3e-18 96.7 140 42.9
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-17 94.7 132 43.9
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-16 92.8 88 55.7
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-16 92.8 80 57.5
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-16 92.0 88 51.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-15 87.4 68 61.8
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-13 82.4 66 60.6
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 1.2e-12 79.3 106 46.2
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 2.1e-12 78.6 68 64.7
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 3.5e-12 77.8 65 66.2
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-11 75.9 52 73.1
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 5.1e-11 73.9 50 74.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.5e-10 72.4 79 49.4
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-10 72.0 69 46.4
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.5e-10 71.6 91 47.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-08 65.5 45 68.9
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 5.3e-08 63.9 64 43.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 4.5e-07 60.8 41 70.7
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 5.8e-07 60.5 55 47.3
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 7.6e-07 60.1 194 27.3
arahy.Tifrunner.gnm1.ann1.URWE26 Arachis hypogaea HOM05D001700 ORTHO05D002131 2.2e-06 58.5 335 25.1
Lj1g0027448 Lotus japonicus HOM05D001700 ORTHO05D002131 2.9e-06 58.2 331 24.8
Glyma.14G152500 Glycine max HOM05D001700 ORTHO05D002131 4.9e-06 57.4 335 24.5
AagrBONN_evm.TU.Sc2ySwM_117.1771 Anthoceros agrestis HOM05D001700 ORTHO05D002131 8.4e-06 56.6 480 24.8
arahy.Tifrunner.gnm1.ann1.ZV0KA8 Arachis hypogaea HOM05D001700 ORTHO05D002131 8.4e-06 56.6 335 25.1


User provided reference genes

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