Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.9e-268 928.7 501 100.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.4e-241 837.0 517 89.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.2e-200 702.6 503 79.3
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-189 666.8 502 75.3
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.3e-189 666.8 502 75.3
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.3e-189 666.8 502 75.3
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 9.6e-180 634.0 501 71.5
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 6.0e-174 614.8 503 72.2
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.3e-172 609.0 502 71.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.8e-171 605.9 529 68.6
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 1.0e-165 587.4 505 69.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 5.5e-159 565.1 502 66.7
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.1e-158 563.1 500 67.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.1e-157 558.5 375 84.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.7e-120 437.2 501 56.3
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-103 381.3 504 51.8
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 9.5e-103 378.3 502 51.2
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.0e-88 329.3 185 97.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.7e-83 313.2 300 66.0
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.9e-74 284.3 277 65.3
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 6.0e-73 279.3 294 55.4
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.3e-72 278.1 284 59.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.7e-72 277.7 294 54.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 5.6e-71 272.7 346 50.0
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.6e-70 271.2 257 60.7
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.8e-69 267.7 250 60.0
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.8e-69 267.7 259 58.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.1e-69 266.9 247 60.3
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 4.0e-69 266.5 298 54.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 5.2e-69 266.2 381 47.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 8.9e-69 265.4 342 47.1
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 8.9e-69 265.4 510 40.2
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.0e-68 264.2 393 43.8
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.6e-68 263.8 296 54.1
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.4e-68 263.5 295 54.9
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 5.8e-68 262.7 249 61.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.3e-67 261.5 502 38.8
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 2.9e-67 260.4 302 52.6
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 4.9e-67 259.6 217 65.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 8.4e-67 258.8 250 58.4
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 8.4e-67 258.8 371 46.6
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.1e-66 258.5 296 52.7
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 3.2e-66 256.9 368 47.3
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.1e-66 255.8 252 59.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 7.1e-66 255.8 298 50.0
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 9.3e-66 255.4 298 51.7
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.2e-65 255.0 257 58.8
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.2e-65 255.0 318 49.4
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.6e-65 254.6 243 56.8
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.1e-65 254.2 347 48.1
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.7e-65 253.8 298 52.3
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.5e-65 253.4 345 43.5
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 3.5e-65 253.4 253 56.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.6e-65 253.1 293 51.9
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 7.8e-65 252.3 396 45.2
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.3e-64 251.5 340 47.1
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.7e-64 251.1 288 51.0
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.7e-64 251.1 513 39.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 3.0e-64 250.4 277 53.8
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.0e-64 250.4 262 56.9
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 6.6e-64 249.2 354 48.0
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 8.7e-64 248.8 271 54.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.9e-63 247.7 220 62.7
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.5e-63 247.3 346 46.0
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 9.6e-63 245.4 301 52.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.3e-62 245.0 277 51.3
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.1e-62 244.2 280 51.4
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.6e-62 243.4 248 55.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 3.6e-62 243.4 351 45.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 4.8e-62 243.0 307 48.2
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 6.2e-62 242.7 352 47.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 8.1e-62 242.3 287 50.5
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.4e-61 241.5 248 55.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.1e-61 240.4 222 61.7
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.1e-61 240.4 291 48.1
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 5.3e-61 239.6 358 45.5
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.9e-61 239.2 354 46.0
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 9.0e-61 238.8 346 45.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-60 238.4 315 46.0
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.4e-60 236.5 303 48.8
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 7.6e-60 235.7 246 55.3
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 7.6e-60 235.7 360 43.1
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 9.9e-60 235.3 249 53.0
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 2.9e-59 233.8 223 57.4
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 3.8e-59 233.4 294 48.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.1e-58 231.9 244 54.1
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.4e-58 230.7 236 56.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 4.2e-58 229.9 307 48.5
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.2e-57 228.4 329 43.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 6.0e-57 226.1 289 50.2
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.3e-56 224.2 244 53.7
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 2.5e-55 220.7 299 45.2
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.3e-54 218.4 336 42.6
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.8e-54 217.2 335 42.7
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.4e-53 214.2 359 43.7
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.1e-53 213.8 248 48.0
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 6.4e-51 206.1 248 51.6
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 9.3e-50 202.2 236 47.5
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.2e-49 201.8 301 44.9
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 3.5e-49 200.3 181 61.3
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.3e-48 198.4 284 45.4
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 1.8e-48 198.0 181 66.9
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 3.0e-48 197.2 365 37.8
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 9.6e-47 192.2 242 47.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 2.8e-46 190.7 182 58.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-44 185.3 272 45.2
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 2.6e-44 184.1 214 57.0
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.4e-44 183.7 258 44.2
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 6.5e-43 179.5 298 39.9
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 3.2e-42 177.2 216 46.3
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 5.5e-42 176.4 216 47.7
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.1e-42 176.0 378 35.2
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.6e-41 174.9 253 44.7
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 2.1e-41 174.5 280 43.2
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 3.5e-41 173.7 310 44.8
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 8.7e-40 169.1 253 40.7
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.5e-39 167.5 243 44.0
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 7.4e-39 166.0 130 73.1
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 7.4e-39 166.0 130 73.1
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.7e-38 163.7 245 43.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 9.0e-37 159.1 239 43.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.1e-34 152.1 190 56.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.5e-34 151.0 277 39.7
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.3e-32 144.4 293 35.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.7e-31 139.8 458 31.7
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 9.7e-31 139.0 138 54.3
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.8e-30 136.7 185 47.6
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.8e-29 134.8 170 48.2
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 2.0e-28 131.3 134 61.2
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 2.0e-28 131.3 127 63.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.6e-28 131.0 86 80.2
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.9e-28 129.8 394 30.7
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 8.5e-27 125.9 194 39.2
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 4.2e-26 123.6 188 44.7
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.4e-24 118.6 195 39.5
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.9e-24 117.1 166 45.8
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 9.7e-23 112.5 219 35.6
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 9.7e-23 112.5 121 52.9
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 3.4e-20 104.0 156 42.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.5e-20 103.6 172 40.7
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.9e-19 100.9 117 49.6
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 3.8e-19 100.5 117 49.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.4e-18 98.6 92 58.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.4e-16 92.0 83 53.0
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 8.8e-16 89.4 82 56.1
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.0e-15 88.2 79 53.2
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 2.8e-14 84.3 213 30.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.4e-13 81.3 243 28.4
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.2e-12 79.0 201 35.3
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 6.5e-11 73.2 112 40.2
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 8.5e-11 72.8 77 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 8.8e-08 62.8 115 35.7
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.0e-07 61.6 47 59.6
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 3.3e-07 60.8 163 30.7
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 4.4e-07 60.5 74 47.3
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 9.7e-07 59.3 99 36.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.8e-06 57.8 55 49.1


User provided reference genes

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