Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.0e-234 815.5 424 100.0
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 9.1e-232 806.6 424 98.6
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.7e-231 805.1 424 98.6
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 7.2e-221 770.4 422 93.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 3.6e-220 768.1 423 94.3
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 4.4e-218 761.1 422 93.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 4.4e-218 761.1 422 93.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 7.5e-218 760.4 422 93.4
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 7.5e-218 760.4 422 93.4
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 7.5e-218 760.4 422 93.4
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 7.0e-216 753.8 422 92.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.6e-215 752.7 422 92.4
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.4e-210 734.6 422 90.5
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 5.0e-206 721.1 420 89.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 4.3e-205 718.0 423 89.4
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 5.2e-203 711.1 423 89.4
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 9.2e-200 700.3 422 86.7
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.6e-196 689.5 436 85.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.6e-188 661.8 412 83.3
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 8.1e-188 660.6 412 83.3
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.2e-186 656.8 428 80.6
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.5e-186 656.4 429 82.1
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.6e-186 654.1 427 81.5
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.6e-183 646.4 427 80.8
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.7e-182 642.9 428 79.9
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.2e-180 636.7 423 80.1
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.1e-180 636.0 412 80.6
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.1e-180 636.0 424 79.2
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.8e-180 635.6 422 78.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 6.2e-180 634.4 428 79.9
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 8.1e-180 634.0 425 78.6
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.1e-180 634.0 412 80.3
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 9.0e-179 630.6 414 81.2
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.4e-176 622.5 425 77.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 7.8e-175 617.5 423 78.3
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 3.3e-173 612.1 413 77.7
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.3e-172 610.1 426 77.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 4.8e-172 608.2 429 76.5
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.0e-171 605.1 425 75.1
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 4.0e-171 605.1 416 76.7
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 6.9e-171 604.4 444 74.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 9.0e-171 604.0 425 75.1
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 9.0e-171 604.0 424 75.0
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.2e-170 603.6 424 77.4
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.0e-170 602.8 422 76.1
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.6e-170 602.4 425 74.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.8e-170 601.3 428 75.2
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.3e-169 600.1 412 77.4
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.7e-169 599.7 424 75.2
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 3.2e-168 595.5 427 75.9
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.2e-168 595.5 422 75.4
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.2e-168 595.1 421 74.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 5.4e-168 594.7 419 75.9
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 9.3e-168 594.0 453 72.2
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.2e-167 593.6 412 75.0
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.6e-167 593.2 423 75.7
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.0e-167 591.3 426 74.6
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 7.9e-167 590.9 425 73.9
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 7.9e-167 590.9 429 74.6
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 6.7e-166 587.8 412 74.3
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-165 587.0 426 74.4
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.3e-165 585.5 434 72.8
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 4.3e-165 585.1 425 74.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 5.6e-165 584.7 436 73.2
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 7.4e-165 584.3 427 72.6
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.6e-164 583.2 425 74.6
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.8e-164 582.4 416 74.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.7e-164 582.0 422 72.7
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 4.8e-164 581.6 426 73.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 4.8e-164 581.6 425 72.9
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 6.2e-164 581.3 469 68.9
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 6.2e-164 581.3 430 74.7
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 8.1e-164 580.9 420 74.0
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 2.4e-163 579.3 426 73.0
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 6.9e-163 577.8 419 72.8
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 9.0e-163 577.4 401 76.6
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.5e-162 576.6 419 74.0
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 2.0e-162 576.2 426 72.8
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 2.6e-162 575.9 418 74.4
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 5.8e-162 574.7 427 73.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 5.8e-162 574.7 426 72.5
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 7.6e-162 574.3 414 74.2
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.2e-161 572.8 426 73.9
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.9e-161 572.4 425 72.0
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 8.4e-161 570.9 441 71.2
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.2e-160 568.9 443 72.2
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.2e-160 568.9 412 71.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.1e-157 560.5 427 70.5
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.5e-157 560.1 424 73.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.9e-157 559.7 460 66.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 6.2e-156 554.7 418 72.7
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.4e-155 552.7 421 69.4
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 5.3e-155 551.6 375 77.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.4e-154 548.9 426 70.4
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.3e-150 536.2 419 70.2
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.3e-150 536.2 458 65.7
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.3e-149 532.3 414 69.1
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 1.3e-148 530.4 425 69.9
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.3e-148 528.1 425 70.8
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.8e-147 526.6 427 66.7
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.4e-147 526.2 507 59.6
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.0e-146 523.1 381 72.4
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.0e-145 520.8 426 69.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.2e-143 513.8 423 68.1
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.0e-142 510.8 429 65.7
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.4e-142 510.4 511 60.3
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.9e-141 506.5 411 69.1
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.4e-136 490.3 385 72.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.4e-136 490.3 414 65.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 7.2e-136 488.0 483 61.7
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.1e-135 486.5 369 72.4
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 6.7e-134 481.5 381 73.2
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.1e-131 474.2 427 62.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 4.2e-128 462.2 427 61.8
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.5e-125 453.8 405 60.7
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.4e-123 446.4 446 56.3
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 5.0e-121 438.7 361 66.2
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 7.2e-120 434.9 431 58.9
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.0e-117 426.8 391 63.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.3e-117 426.0 411 59.6
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.3e-116 424.1 315 73.3
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 3.5e-114 416.0 342 65.5
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 5.0e-113 412.1 426 54.7
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-112 411.0 424 56.4
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 9.4e-112 407.9 423 58.6
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-102 377.9 432 52.1
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.7e-100 370.5 368 59.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.9e-69 265.0 213 68.1
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.9e-67 260.8 382 40.3
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 2.0e-61 240.7 421 37.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 7.1e-35 152.5 201 50.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.3e-28 131.7 84 78.6
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.0e-16 91.3 43 97.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.0e-16 91.3 43 97.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 2.2e-15 87.8 55 76.4
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.3e-07 59.7 53 64.2


User provided reference genes

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