Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50350 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 2.7e-73 278.5 134 100.0
AL1G57990 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 2.5e-58 228.8 158 75.9
Carub.0001s3943 Capsella rubella HOM05D000082 ORTHO05D000038 4.8e-54 214.5 158 71.5
Sp1g37170 Schrenkiella parvula HOM05D000082 ORTHO05D000038 3.1e-53 211.8 157 69.4
Thhalv10011690m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 2.0e-52 209.1 157 69.4
Thhalv10021059m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 4.1e-29 131.7 181 44.8
BolC6t35647H Brassica oleracea HOM05D000082 ORTHO05D000038 1.7e-27 126.3 144 54.9
C06p05420 Brassica napus HOM05D000082 ORTHO05D000038 1.5e-26 123.2 144 54.9
THA.LOC104809028 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.1e-24 117.1 170 43.5
A03p41490 Brassica napus HOM05D000082 ORTHO05D000038 1.8e-24 116.3 164 45.7
BraA03t13303Z Brassica rapa HOM05D000082 ORTHO05D000038 1.8e-24 116.3 164 45.7
AL3G33520 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 2.3e-24 115.9 177 42.9
Carub.0003s1985 Capsella rubella HOM05D000082 ORTHO05D000038 2.3e-24 115.9 177 44.6
AT3G19950 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 3.1e-24 115.5 177 45.2
BcaC01g03594 Brassica carinata HOM05D000082 ORTHO05D000038 4.0e-24 115.2 167 44.3
BolC3t17365H Brassica oleracea HOM05D000082 ORTHO05D000038 4.0e-24 115.2 167 44.3
Sp3g17970 Schrenkiella parvula HOM05D000082 ORTHO05D000038 4.0e-24 115.2 181 43.1
C01p44120 Brassica napus HOM05D000082 ORTHO05D000038 5.2e-24 114.8 166 45.8
BcaB06g26064 Brassica carinata HOM05D000082 ORTHO05D000038 3.4e-23 112.1 167 44.3
BcaNung06534 Brassica carinata HOM05D000082 ORTHO05D000038 3.4e-23 112.1 167 44.3
A01p34710 Brassica napus HOM05D000082 ORTHO05D000038 3.4e-23 112.1 168 44.6
BraA01t03557Z Brassica rapa HOM05D000082 ORTHO05D000038 3.4e-23 112.1 168 44.6
BolC1t04375H Brassica oleracea HOM05D000082 ORTHO05D000038 4.4e-23 111.7 166 44.6
BcaB04g19072 Brassica carinata HOM05D000082 ORTHO05D000038 5.8e-23 111.3 168 44.0
BcaB04g20675 Brassica carinata HOM05D000082 ORTHO05D000038 4.9e-22 108.2 165 40.6
A06p03210 Brassica napus HOM05D000082 ORTHO05D000038 9.2e-21 104.0 140 48.6
A05p29190 Brassica napus HOM05D000082 ORTHO05D000038 4.6e-20 101.7 170 42.4
BraA05t21803Z Brassica rapa HOM05D000082 ORTHO05D000038 6.0e-20 101.3 171 42.1
C05p44690 Brassica napus HOM05D000082 ORTHO05D000038 1.0e-19 100.5 174 43.1
BcaC05g28392 Brassica carinata HOM05D000082 ORTHO05D000038 1.3e-19 100.1 174 42.5
BolC5t33196H Brassica oleracea HOM05D000082 ORTHO05D000038 1.3e-19 100.1 174 42.5
CARHR095480 Cardamine hirsuta HOM05D000082 ORTHO05D000038 1.5e-18 96.7 175 37.7
BcaC09g48953 Brassica carinata HOM05D000082 ORTHO05D000038 1.9e-18 96.3 116 50.0
Manes.04G056000 Manihot esculenta HOM05D000082 ORTHO05D000038 5.2e-16 88.2 170 38.2
Thecc.02G157000 Theobroma cacao HOM05D000082 ORTHO05D000038 8.4e-14 80.9 182 35.7
Gohir.A12G133200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.4e-13 79.3 168 35.7
Dinv07884 Davidia involucrata HOM05D000082 ORTHO05D000038 3.2e-13 79.0 179 34.6
Gohir.A03G165800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.1e-13 78.6 154 35.7
Gohir.D12G136700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-13 78.2 161 37.3
Gorai.008G147900 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-13 78.2 161 37.3
Gohir.A13G061200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.1e-13 77.8 161 36.6
Gohir.D13G060700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.2e-12 77.0 161 36.6
Gorai.013G068800 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.2e-12 77.0 161 36.6
Gorai.005G211800 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.1e-12 76.3 169 33.7
BcaC02g10421 Brassica carinata HOM05D000082 ORTHO05D000038 2.7e-12 75.9 80 58.8
Duzib248G0616 Durio zibethinus HOM05D000082 ORTHO05D000038 2.7e-12 75.9 177 34.5
Gohir.A04G109100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.5e-12 75.5 183 34.4
Gohir.D04G148600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.6e-12 75.1 183 33.9
Gorai.012G134900 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.6e-12 75.1 183 33.9
PGR044G1015 Punica granatum HOM05D000082 ORTHO05D000038 1.0e-11 73.9 163 34.4
Actinidia34685 Actinidia chinensis HOM05D000082 ORTHO05D000038 1.3e-11 73.6 165 35.2
CSS0032296 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 5.1e-11 71.6 160 33.8
Ciclev10020902m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.5e-10 69.3 138 34.1
CSS0036913 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 3.3e-10 68.9 160 33.1
Actinidia02660 Actinidia chinensis HOM05D000082 ORTHO05D000038 4.3e-10 68.6 159 34.6
FAN08G2350 Fragaria x ananassa HOM05D000082 ORTHO05D000038 9.6e-10 67.4 180 31.1
HanXRQChr16g0503341 Helianthus annuus HOM05D000082 ORTHO05D000038 1.2e-09 67.0 99 42.4
Duzib052G0719 Durio zibethinus HOM05D000082 ORTHO05D000038 1.6e-09 66.6 179 30.2
CDE07G0919 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 2.8e-09 65.9 171 29.2
AUR62017722 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.8e-09 65.9 179 31.3
FAN04G2604 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.8e-09 65.9 176 30.1
Atru.chr9.123 Acer truncatum HOM05D000082 ORTHO05D000038 4.7e-09 65.1 168 33.3
CsaV3_5G020690 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.7e-09 65.1 151 33.1
Nn4g25118 Nelumbo nucifera HOM05D000082 ORTHO05D000038 4.7e-09 65.1 176 32.4
AUR62032957 Chenopodium quinoa HOM05D000082 ORTHO05D000038 6.2e-09 64.7 178 32.0
MBI03_g13824_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010224 6.2e-09 64.7 172 34.9
MSTRG.2065 Avicennia marina HOM05D000082 ORTHO05D000038 8.1e-09 64.3 152 35.5
ClCG01G008200 Citrullus lanatus HOM05D000082 ORTHO05D000038 8.1e-09 64.3 153 33.3
CDE04G2208 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 1.4e-08 63.5 122 32.0
Ah.01g012590 Amaranthus hybridus HOM05D000082 ORTHO05D000038 3.1e-08 62.4 162 30.9
Prupe.5G243100 Prunus persica HOM05D000082 ORTHO05D000038 3.1e-08 62.4 174 30.5
Peaxi162Scf00681g00022 Petunia axillaris HOM05D000082 ORTHO05D000038 4.0e-08 62.0 151 30.5
Sabra07G0061900 Salix brachista HOM05D000082 ORTHO05D000038 4.0e-08 62.0 139 32.4
Sed0007640 Sechium edule HOM05D000082 ORTHO05D000038 4.0e-08 62.0 152 32.9
TAR629G0162 Trochodendron aralioides HOM05D000082 ORTHO05D000038 4.0e-08 62.0 179 31.8
FvH4_5g18350 Fragaria vesca HOM05D000082 ORTHO05D000038 8.9e-08 60.8 70 38.6
FAN18G1949 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.9e-08 60.8 70 38.6
Potri.007G074014 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.2e-07 60.5 153 30.7
CSS0012912 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 1.5e-07 60.1 90 38.9
CSS0038428 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 1.5e-07 60.1 90 38.9
Lalb_Chr06g0163891 Lupinus albus HOM05D000082 ORTHO05D000038 1.5e-07 60.1 152 35.5
Glyma.09G165200 Glycine max HOM05D000082 ORTHO05D000038 2.0e-07 59.7 163 30.7
Potri.005G090500 Populus trichocarpa HOM05D000082 ORTHO05D000038 2.6e-07 59.3 148 31.1
Glyma.16G213500 Glycine max HOM05D000082 ORTHO05D000038 4.4e-07 58.5 164 31.7
Lsat_1_v5_gn_8_881 Lactuca sativa HOM05D000082 ORTHO05D000038 5.8e-07 58.2 165 33.3
PGR083G0599 Punica granatum HOM05D000082 ORTHO05D000038 5.8e-07 58.2 61 44.3
HPP92_014773 Vanilla planifolia HOM05D000082 ORTHO05D000038 5.8e-07 58.2 174 29.3
MBI06_g27506_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 9.9e-07 57.4 170 29.4
CiPaw.16G072700 Carya illinoinensis HOM05D000082 ORTHO05D000038 1.7e-06 56.6 166 29.5
HanXRQChr15g0492131 Helianthus annuus HOM05D000082 ORTHO05D000038 1.7e-06 56.6 157 31.8
Nitab4.5_0005114g0010 Nicotiana tabacum HOM05D000082 ORTHO05D000038 1.7e-06 56.6 151 27.8
Rhsim08G0125000 Rhododendron simsii HOM05D000082 ORTHO05D000038 1.7e-06 56.6 172 32.0
TAR371G1132 Trochodendron aralioides HOM05D000082 ORTHO05D000038 1.7e-06 56.6 166 28.9
EL10Ac8g19483 Beta vulgaris HOM05D000082 ORTHO05D000038 2.2e-06 56.2 188 28.2
TAR371G0911 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.2e-06 56.2 164 29.3
Lj2g0010707 Lotus japonicus HOM05D000082 ORTHO05D000038 2.9e-06 55.8 170 29.4
Sabra05G0074600 Salix brachista HOM05D000082 ORTHO05D000038 2.9e-06 55.8 146 28.8
Phvul.004G139600 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 3.8e-06 55.5 147 30.6
Ah.09g229320 Amaranthus hybridus HOM05D000082 ORTHO05D000038 4.9e-06 55.1 156 32.1
arahy.Tifrunner.gnm1.ann1.0D67R5 Arachis hypogaea HOM05D000082 ORTHO05D000038 4.9e-06 55.1 159 29.6
ECA233G5770 Erigeron canadensis HOM05D000082 ORTHO05D000038 4.9e-06 55.1 140 35.0
MD06G1239200 Malus domestica HOM05D000082 ORTHO05D000038 4.9e-06 55.1 166 28.3
HPP92_015159 Vanilla planifolia HOM05D000082 ORTHO05D000038 4.9e-06 55.1 191 28.8
CsaV3_1G007470 Cucumis sativus L. HOM05D000082 ORTHO05D000038 8.4e-06 54.3 63 42.9
FAN13G2128 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.4e-06 54.3 59 40.7


User provided reference genes

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