Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.7e-304 1048.5 533 100.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.6e-294 1015.4 533 97.0
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 2.8e-278 961.4 537 91.4
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 8.1e-278 959.9 538 91.3
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 4.2e-274 947.6 537 89.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.1e-271 939.5 537 88.8
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 7.6e-260 900.2 541 86.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-259 899.0 539 86.5
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 3.8e-259 897.9 540 86.5
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-258 896.0 540 86.3
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.2e-257 892.9 562 82.0
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 2.4e-253 878.6 584 80.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 4.9e-251 870.9 539 83.1
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.4e-250 869.4 539 83.1
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 2.7e-249 865.1 539 82.9
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.8e-248 862.4 539 82.6
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 7.4e-247 857.1 538 83.1
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-242 842.4 548 80.5
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 2.3e-240 835.5 543 78.3
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.9e-196 688.0 549 65.4
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.7e-195 686.4 549 65.2
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.3e-194 682.2 546 63.4
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 5.6e-194 681.4 546 65.4
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.0e-192 677.2 549 64.3
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 4.0e-192 675.2 544 64.0
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.5e-191 673.3 533 63.4
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 4.9e-190 668.3 544 64.5
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.1e-189 667.2 547 64.2
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 9.2e-189 664.1 541 63.4
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 2.0e-188 662.9 552 64.5
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 6.0e-188 661.4 531 62.7
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.7e-187 659.8 565 61.1
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 6.6e-187 657.9 541 65.6
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.5e-186 656.8 546 62.5
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 5.2e-184 648.3 550 62.0
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 6.8e-184 647.9 529 64.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 8.9e-184 647.5 532 63.0
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 2.2e-182 642.9 504 64.3
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 2.9e-182 642.5 533 61.9
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.4e-181 639.4 533 61.7
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.1e-181 638.6 534 60.3
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 7.0e-181 637.9 552 61.2
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.2e-180 637.1 533 62.1
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.2e-180 637.1 534 62.2
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.2e-180 637.1 554 61.7
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.6e-180 636.7 533 61.9
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 6.0e-180 634.8 542 60.9
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.0e-179 632.5 533 61.9
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 8.6e-179 630.9 540 60.0
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.5e-178 630.2 533 61.9
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 3.3e-178 629.0 550 58.7
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.3e-178 629.0 532 62.0
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.4e-176 623.6 543 61.1
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.0e-176 622.1 540 60.9
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 8.9e-176 620.9 508 62.8
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 8.9e-176 620.9 558 59.7
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 2.0e-175 619.8 542 60.9
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 5.8e-175 618.2 537 59.0
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 7.5e-175 617.8 536 58.6
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 2.9e-174 615.9 552 59.8
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.7e-174 615.5 550 59.8
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 7.1e-173 611.3 544 57.9
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 4.6e-172 608.6 544 57.5
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 6.0e-172 608.2 556 59.0
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 1.0e-171 607.4 545 58.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 5.1e-171 605.1 532 60.3
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 6.6e-171 604.7 542 59.4
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.9e-170 603.2 541 57.7
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 4.7e-169 598.6 545 57.6
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 8.1e-169 597.8 534 59.6
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 6.8e-168 594.7 498 61.4
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.3e-166 590.5 550 56.4
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.9e-166 589.3 538 58.4
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 3.8e-166 589.0 539 57.3
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 8.4e-166 587.8 494 62.3
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 1.1e-165 587.4 546 58.8
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 2.4e-165 586.3 561 56.1
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.4e-165 586.3 537 57.2
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.7e-163 580.1 503 61.6
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.3e-163 579.7 546 58.4
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 6.6e-163 578.2 556 55.6
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.9e-162 576.6 538 57.8
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.3e-162 575.9 525 57.9
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 2.1e-161 573.2 551 57.2
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.1e-160 570.9 575 53.7
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 5.3e-160 568.5 545 55.4
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 2.6e-159 566.2 543 55.6
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 9.9e-159 564.3 548 57.5
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.3e-158 563.9 691 47.9
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 4.6e-156 555.4 524 55.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.3e-155 553.1 545 56.5
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 1.6e-153 547.0 537 53.6
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.8e-152 543.5 564 53.0
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 4.9e-150 535.4 494 58.3
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 2.5e-146 523.1 546 54.4
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-145 520.8 325 83.7
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.3e-145 520.8 545 55.4
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 7.6e-143 511.5 533 52.7
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.1e-141 507.7 416 63.2
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.4e-141 507.3 443 60.3
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 6.2e-137 491.9 545 50.5
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 1.4e-136 490.7 542 51.7
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.4e-136 490.0 518 52.5
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.7e-129 466.1 556 47.8
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.4e-128 464.2 695 43.3
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.6e-127 459.9 490 52.7
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.3e-115 420.2 340 66.8
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 5.0e-110 402.5 425 52.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.1e-101 374.8 526 41.1
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.2e-101 372.9 321 62.0
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 2.3e-99 367.1 392 53.6
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 6.3e-97 359.0 359 56.0
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.4e-96 357.1 322 61.2
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 7.7e-95 352.1 342 57.3
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.3e-94 351.3 534 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 3.2e-93 346.7 534 39.9
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.4e-91 341.3 516 40.5
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.2e-90 338.2 517 39.7
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 3.4e-82 310.1 363 51.5
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 7.0e-80 302.4 332 48.5
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 7.3e-77 292.4 381 46.7
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-75 288.1 347 50.1
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 5.6e-69 266.2 143 90.9
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 2.7e-63 247.3 163 77.9
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.1e-59 235.3 197 55.8
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 9.6e-53 212.2 132 76.5
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 6.2e-52 209.5 175 56.0
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.4e-51 208.4 134 73.9
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 3.4e-50 203.8 140 68.6
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 9.9e-50 202.2 150 65.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.8e-43 181.4 508 31.5
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.2e-42 178.7 208 47.1
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.2e-40 170.6 104 76.0
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.4e-32 144.4 83 80.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.5e-29 135.2 107 63.6
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.5e-26 125.2 122 54.9
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 5.5e-24 116.7 138 47.8
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 9.3e-24 115.9 99 54.5
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 8.7e-22 109.4 122 44.3
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.8e-17 94.0 62 72.6
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.4e-17 92.8 103 49.5
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 2.5e-16 91.3 99 47.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.2e-15 89.0 84 59.5
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.9e-15 86.3 101 48.5
BcaB07g33467 Brassica carinata HOM05D004567 ORTHO05D005726 3.0e-14 84.3 56 76.8
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-11 75.9 96 41.7
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.2e-10 72.4 65 52.3
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 1.2e-10 72.4 54 57.4
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.6e-10 71.2 96 42.7
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 8.5e-09 66.2 89 41.6
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 3.6e-07 60.8 131 27.5
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 1.8e-06 58.5 151 35.1


User provided reference genes

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