Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50080 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 1.1e-44 183.0 92 100.0
BolC4t21678H Brassica oleracea HOM05D000003 ORTHO05D000283 5.5e-17 90.9 61 65.6
Carub.0002s0384 Capsella rubella HOM05D000003 ORTHO05D000283 9.5e-17 90.1 63 60.3
BraA01t03809Z Brassica rapa HOM05D000003 ORTHO05D000283 2.1e-16 89.0 59 66.1
BolC1t01934H Brassica oleracea HOM05D000003 ORTHO05D000283 2.8e-16 88.6 65 55.4
BraA02t09340Z Brassica rapa HOM05D000003 ORTHO05D000283 3.6e-16 88.2 65 58.5
BraA04t15908Z Brassica rapa HOM05D000003 ORTHO05D000283 4.7e-16 87.8 65 58.5
BolC1t01479H Brassica oleracea HOM05D000003 ORTHO05D000283 6.1e-16 87.4 61 63.9
BcaC07g39463 Brassica carinata HOM05D000003 ORTHO05D000283 1.0e-15 86.7 63 63.5
BolC6t37189H Brassica oleracea HOM05D000003 ORTHO05D000283 1.0e-15 86.7 65 61.5
BolC3t21045H Brassica oleracea HOM05D000003 ORTHO05D000283 5.2e-15 84.3 63 57.1
Carub.0001s4272 Capsella rubella HOM05D000003 ORTHO05D000283 5.2e-15 84.3 63 58.7
BraA10t42619Z Brassica rapa HOM05D000003 ORTHO05D000283 6.8e-15 84.0 65 55.4
AT1G60720 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 1.2e-14 83.2 63 57.1
BolC3t14559H Brassica oleracea HOM05D000003 ORTHO05D000283 1.2e-14 83.2 71 50.7
BcaC08g44421 Brassica carinata HOM05D013042 ORTHO05D016769 3.4e-14 81.6 61 54.1
BolC3t18289H Brassica oleracea HOM05D043430 ORTHO05D040742 4.4e-14 81.3 63 55.6
BraA06t24482Z Brassica rapa HOM05D000003 ORTHO05D000283 5.7e-14 80.9 61 50.8
Carub.0005s0878 Capsella rubella HOM05D000003 ORTHO05D000283 5.7e-14 80.9 63 57.1
BcaC05g25744 Brassica carinata HOM05D000003 ORTHO05D000283 9.8e-14 80.1 61 59.0
BolC5t30376H Brassica oleracea HOM05D000003 ORTHO05D000283 9.8e-14 80.1 61 59.0
BraA01t03611Z Brassica rapa HOM05D000003 ORTHO05D000283 9.8e-14 80.1 63 58.7
BraA03t09438Z Brassica rapa HOM05D000003 ORTHO05D000283 9.8e-14 80.1 61 57.4
BolC5t31110H Brassica oleracea HOM05D000003 ORTHO05D000283 1.3e-13 79.7 61 52.5
Carub.0003s1889 Capsella rubella HOM05D000003 ORTHO05D000283 1.3e-13 79.7 63 52.4
BolC3t17965H Brassica oleracea HOM05D000003 ORTHO05D000283 1.7e-13 79.3 61 54.1
BolC8t49686H Brassica oleracea HOM05D000003 ORTHO05D000283 1.7e-13 79.3 63 54.0
BolC9t55991H Brassica oleracea HOM05D000003 ORTHO05D000283 2.2e-13 79.0 64 53.1
AT1G33710 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 4.9e-13 77.8 61 57.4
BcaB07g31693 Brassica carinata HOM05D000003 ORTHO05D000283 4.9e-13 77.8 63 57.1
BolC2t11979H Brassica oleracea HOM05D000003 ORTHO05D000283 4.9e-13 77.8 64 53.1
BraA08t32451Z Brassica rapa HOM05D000003 ORTHO05D000283 4.9e-13 77.8 61 52.5
C02p05510 Brassica napus HOM05D000003 ORTHO05D000283 8.3e-13 77.0 63 50.8
BolC2t06497H Brassica oleracea HOM05D000003 ORTHO05D000283 8.3e-13 77.0 63 50.8
BolC2t10666H Brassica oleracea HOM05D000003 ORTHO05D000283 8.3e-13 77.0 61 55.7
BraA09t39919Z Brassica rapa HOM05D000003 ORTHO05D000283 8.3e-13 77.0 63 52.4
BolC4t22327H Brassica oleracea HOM05D000003 ORTHO05D000283 1.1e-12 76.6 61 55.7
BolC5t30600H Brassica oleracea HOM05D000003 ORTHO05D000283 1.1e-12 76.6 59 55.9
BolC8t46826H Brassica oleracea HOM05D000003 ORTHO05D000283 1.4e-12 76.3 62 53.2
BolC8t51615H Brassica oleracea HOM05D000003 ORTHO05D000283 1.8e-12 75.9 62 53.2
BraA01t02789Z Brassica rapa HOM05D000003 ORTHO05D000283 1.8e-12 75.9 61 54.1
AL364U10020 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 2.4e-12 75.5 61 52.5
BolC4t21711H Brassica oleracea HOM05D000003 ORTHO05D000283 2.4e-12 75.5 62 53.2
BraA01t01070Z Brassica rapa HOM05D000003 ORTHO05D000283 2.4e-12 75.5 62 51.6
BraA05t20748Z Brassica rapa HOM05D000003 ORTHO05D000283 2.4e-12 75.5 63 57.1
BcaB03g15353 Brassica carinata HOM05D000003 ORTHO05D000283 3.1e-12 75.1 62 56.5
C02p13220 Brassica napus HOM05D000003 ORTHO05D000283 4.1e-12 74.7 61 50.8
BraA03t14881Z Brassica rapa HOM05D000003 ORTHO05D000283 4.1e-12 74.7 63 50.8
BcaB08g37117 Brassica carinata HOM05D000003 ORTHO05D000283 5.4e-12 74.3 61 52.5
BolC1t05746H Brassica oleracea HOM05D000003 ORTHO05D000283 5.4e-12 74.3 65 50.8
C08p26330 Brassica napus HOM05D000247 ORTHO05D000288 7.0e-12 73.9 61 52.5
BolC7t40780H Brassica oleracea HOM05D000003 ORTHO05D000283 1.2e-11 73.2 64 50.0
BraA05t19597Z Brassica rapa HOM05D000003 ORTHO05D000283 1.2e-11 73.2 61 54.1
BraA09t39368Z Brassica rapa HOM05D000003 ORTHO05D000283 1.6e-11 72.8 63 47.6
BolC1t04817H Brassica oleracea HOM05D000003 ORTHO05D000283 2.0e-11 72.4 64 50.0
BolC5t32455H Brassica oleracea HOM05D000003 ORTHO05D000283 2.7e-11 72.0 63 50.8
BcaB06g25642 Brassica carinata HOM05D000003 ORTHO05D000283 3.5e-11 71.6 61 47.5
BcaC03g15259 Brassica carinata HOM05D000003 ORTHO05D000283 3.5e-11 71.6 81 43.2
BcaC09g48631 Brassica carinata HOM05D000003 ORTHO05D000283 3.5e-11 71.6 61 54.1
BolC5t33234H Brassica oleracea HOM05D000003 ORTHO05D000283 3.5e-11 71.6 63 49.2
Carub.0004s0983 Capsella rubella HOM05D000003 ORTHO05D000283 3.5e-11 71.6 61 50.8
AT4G10613 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 4.5e-11 71.2 63 54.0
BcaB05g22301 Brassica carinata HOM05D000003 ORTHO05D000283 4.5e-11 71.2 61 52.5
BcaC05g28427 Brassica carinata HOM05D000003 ORTHO05D000283 4.5e-11 71.2 63 47.6
BcaC08g44634 Brassica carinata HOM05D000003 ORTHO05D000004 4.5e-11 71.2 61 54.1
AT2G19146 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 7.8e-11 70.5 63 46.0
C02p50310 Brassica napus HOM05D000003 ORTHO05D000283 1.0e-10 70.1 61 45.9
BolC2t11113H Brassica oleracea HOM05D000003 ORTHO05D000283 1.0e-10 70.1 61 45.9
BcaC03g16041 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-10 69.7 61 47.5
A09p35340 Brassica napus HOM05D000003 ORTHO05D000283 1.3e-10 69.7 63 42.9
BolC1t04682H Brassica oleracea HOM05D000003 ORTHO05D000283 1.3e-10 69.7 61 52.5
BolC3t17050H Brassica oleracea HOM05D000003 ORTHO05D000283 1.3e-10 69.7 64 50.0
BolC2t10393H Brassica oleracea HOM05D000003 ORTHO05D000283 1.7e-10 69.3 61 49.2
BcaB04g17131 Brassica carinata HOM05D000003 ORTHO05D000283 2.3e-10 68.9 61 49.2
BraA03t14906Z Brassica rapa HOM05D000003 ORTHO05D000283 2.9e-10 68.6 61 47.5
BcaNung00655 Brassica carinata HOM05D000003 ORTHO05D000283 3.8e-10 68.2 61 47.5
BolC8t47987H Brassica oleracea HOM05D000003 ORTHO05D000283 3.8e-10 68.2 64 42.2
BraA03t11296Z Brassica rapa HOM05D025974 ORTHO05D026840 3.8e-10 68.2 54 53.7
BraA07t28678Z Brassica rapa HOM05D000003 ORTHO05D000283 3.8e-10 68.2 62 51.6
BolC9t53872H Brassica oleracea HOM05D000003 ORTHO05D000283 5.0e-10 67.8 61 52.5
BraA06t23300Z Brassica rapa HOM05D000003 ORTHO05D000283 5.0e-10 67.8 61 52.5
Thhalv10011025m.g Eutrema salsugineum HOM05D000003 ORTHO05D000283 5.0e-10 67.8 49 61.2
BolC9t58165H Brassica oleracea HOM05D000003 ORTHO05D000283 6.6e-10 67.4 63 47.6
BcaC07g38922 Brassica carinata HOM05D000003 ORTHO05D000283 8.6e-10 67.0 61 54.1
BolC2t07440H Brassica oleracea HOM05D000003 ORTHO05D000283 8.6e-10 67.0 59 47.5
BolC6t37916H Brassica oleracea HOM05D000003 ORTHO05D000283 8.6e-10 67.0 61 45.9
BolC8t49499H Brassica oleracea HOM05D000003 ORTHO05D000283 8.6e-10 67.0 61 54.1
BolC9t55464H Brassica oleracea HOM05D000003 ORTHO05D000283 8.6e-10 67.0 61 54.1
BcaB01g00659 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-09 66.2 63 47.6
BcaB03g14515 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-09 66.2 63 47.6
A02p35830 Brassica napus HOM05D002495 ORTHO05D002704 1.5e-09 66.2 63 47.6
BraA02t08584Z Brassica rapa HOM05D002495 ORTHO05D002704 1.5e-09 66.2 63 47.6
BcaC09g49710 Brassica carinata HOM05D000003 ORTHO05D000283 1.9e-09 65.9 61 47.5
BolC2t07393H Brassica oleracea HOM05D000003 ORTHO05D000283 1.9e-09 65.9 64 40.6
BcaC06g31803 Brassica carinata HOM05D000003 ORTHO05D000283 2.5e-09 65.5 61 47.5
BolC1t04577H Brassica oleracea HOM05D000003 ORTHO05D000283 2.5e-09 65.5 61 47.5
BolC3t19601H Brassica oleracea HOM05D000003 ORTHO05D000283 2.5e-09 65.5 66 43.9
BcaC05g27538 Brassica carinata HOM05D000003 ORTHO05D000283 3.3e-09 65.1 63 44.4
A01p00650 Brassica napus HOM05D000003 ORTHO05D000283 3.3e-09 65.1 61 47.5
BraA03t10888Z Brassica rapa HOM05D000003 ORTHO05D000283 3.3e-09 65.1 61 47.5
BcaB04g19379 Brassica carinata HOM05D000003 ORTHO05D000283 4.3e-09 64.7 63 49.2
BcaC09g48764 Brassica carinata HOM05D000003 ORTHO05D000283 4.3e-09 64.7 98 36.7
BraA01t03356Z Brassica rapa HOM05D000003 ORTHO05D000283 5.6e-09 64.3 53 52.8
BcaB08g36266 Brassica carinata HOM05D000003 ORTHO05D000283 1.2e-08 63.2 63 44.4
BolC2t09686H Brassica oleracea HOM05D000003 ORTHO05D000283 1.2e-08 63.2 52 53.8
BolC5t31117H Brassica oleracea HOM05D000003 ORTHO05D000283 1.2e-08 63.2 61 42.6
C03p60270 Brassica napus HOM05D043430 ORTHO05D040742 1.6e-08 62.8 42 61.9
BraA05t21426Z Brassica rapa HOM05D000003 ORTHO05D000283 1.6e-08 62.8 55 47.3
BolC1t03156H Brassica oleracea HOM05D000003 ORTHO05D000283 2.1e-08 62.4 61 41.0
BolC7t42241H Brassica oleracea HOM05D000003 ORTHO05D000283 2.1e-08 62.4 63 44.4
BcaC07g40616 Brassica carinata HOM05D000003 ORTHO05D000283 2.8e-08 62.0 61 45.9
BraA08t33931Z Brassica rapa HOM05D000003 ORTHO05D000283 2.8e-08 62.0 61 45.9
BcaC08g42995 Brassica carinata HOM05D000003 ORTHO05D000283 3.6e-08 61.6 78 34.6
BraA09t41156Z Brassica rapa HOM05D000003 ORTHO05D000283 4.7e-08 61.2 78 34.6
BolC9t58482H Brassica oleracea HOM05D000003 ORTHO05D000283 6.1e-08 60.8 61 42.6
BraA01t03803Z Brassica rapa HOM05D000003 ORTHO05D032625 6.1e-08 60.8 62 43.5
BraA03t14249Z Brassica rapa HOM05D000003 ORTHO05D000283 6.1e-08 60.8 61 44.3
BraA03t10392Z Brassica rapa HOM05D000003 ORTHO05D000283 8.0e-08 60.5 61 42.6
BcaC02g09964 Brassica carinata HOM05D000003 ORTHO05D000283 1.0e-07 60.1 61 41.0
BolC4t25014H Brassica oleracea HOM05D000003 ORTHO05D000283 1.0e-07 60.1 61 41.0
Thhalv10006435m.g Eutrema salsugineum HOM05D000003 ORTHO05D000283 1.0e-07 60.1 60 43.3
BcaC09g49252 Brassica carinata HOM05D000003 ORTHO05D000283 1.4e-07 59.7 64 37.5
BcaB06g27351 Brassica carinata HOM05D000003 ORTHO05D000283 1.8e-07 59.3 63 39.7
BcaNung04922 Brassica carinata HOM05D000003 ORTHO05D000004 1.8e-07 59.3 63 39.7
BolC6t39034H Brassica oleracea HOM05D000003 ORTHO05D000283 1.8e-07 59.3 61 41.0
BcaB05g22562 Brassica carinata HOM05D000003 ORTHO05D000283 2.3e-07 58.9 64 43.8
BcaC03g15588 Brassica carinata HOM05D000003 ORTHO05D000283 2.3e-07 58.9 61 42.6
BraA08t32478Z Brassica rapa HOM05D000003 ORTHO05D000283 4.0e-07 58.2 63 42.9
BcaC01g06642 Brassica carinata HOM05D025974 ORTHO05D026840 5.2e-07 57.8 38 60.5
BcaC04g19549 Brassica carinata HOM05D000003 ORTHO05D000283 5.2e-07 57.8 61 44.3
BolC1t02421H Brassica oleracea HOM05D000003 ORTHO05D000283 5.2e-07 57.8 62 41.9
BolC3t14806H Brassica oleracea HOM05D025974 ORTHO05D026840 5.2e-07 57.8 38 60.5
BcaC08g47261 Brassica carinata HOM05D000003 ORTHO05D000004 8.9e-07 57.0 63 38.1
BraA01t03253Z Brassica rapa HOM05D000003 ORTHO05D000283 1.2e-06 56.6 58 43.1
BcaB06g27353 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-06 56.2 63 38.1
C03p69410 Brassica napus HOM05D000003 ORTHO05D000283 1.5e-06 56.2 59 40.7
AL4G41810 Arabidopsis lyrata HOM05D025974 ORTHO05D026840 2.0e-06 55.8 40 67.5
BraA10t43764Z Brassica rapa HOM05D000003 ORTHO05D000283 2.6e-06 55.5 63 46.0
A03p51840 Brassica napus HOM05D000003 ORTHO05D000283 3.4e-06 55.1 62 38.7
C04p10900 Brassica napus HOM05D000003 ORTHO05D000283 3.4e-06 55.1 61 39.3
BolC4t22682H Brassica oleracea HOM05D000003 ORTHO05D000283 3.4e-06 55.1 61 39.3
BolC5t30702H Brassica oleracea HOM05D000003 ORTHO05D000283 3.4e-06 55.1 61 41.0
Carub.0007s2613 Capsella rubella HOM05D013042 ORTHO05D000283 4.4e-06 54.7 63 41.3
BcaC06g32188 Brassica carinata HOM05D000003 ORTHO05D000283 5.7e-06 54.3 61 41.0
Thhalv10012274m.g Eutrema salsugineum HOM05D000003 ORTHO05D000283 5.7e-06 54.3 61 37.7
BcaB08g35764 Brassica carinata HOM05D000003 ORTHO05D000283 7.5e-06 53.9 73 35.6


User provided reference genes

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