Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 3.4e-311 1070.8 548 100.0
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 8.3e-294 1013.1 552 95.3
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 3.9e-283 977.6 553 92.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.2e-281 972.6 559 89.8
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 5.4e-277 957.2 552 88.9
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.1e-264 916.4 537 88.5
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 8.9e-264 913.3 540 87.2
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 2.0e-263 912.1 540 87.2
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 5.8e-263 910.6 540 87.0
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.0e-260 900.6 540 86.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.5e-258 895.2 540 86.7
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.1e-252 875.5 523 85.1
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.6e-244 849.4 543 78.6
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 5.1e-243 844.3 431 97.2
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.4e-224 783.1 519 73.6
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.4e-224 783.1 515 74.6
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.4e-224 782.3 548 72.4
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 3.1e-224 781.9 544 71.7
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 6.9e-224 780.8 542 71.2
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 9.0e-224 780.4 513 74.3
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 9.0e-224 780.4 523 75.7
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.6e-223 778.9 519 74.4
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 6.5e-222 774.2 526 73.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 6.5e-222 774.2 535 71.6
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 8.5e-222 773.9 513 72.9
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.4e-221 773.1 530 73.2
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.9e-221 772.7 514 73.7
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.5e-221 772.3 535 71.2
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.2e-221 771.5 530 71.9
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.1e-220 769.2 540 71.3
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.6e-220 768.1 532 72.7
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.0e-219 765.4 518 73.6
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 8.8e-219 763.8 542 70.3
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 2.0e-218 762.7 527 72.5
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.3e-218 761.9 535 70.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 5.7e-218 761.1 540 70.6
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.3e-217 760.0 510 73.7
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.3e-217 760.0 514 71.2
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.7e-217 758.4 526 72.8
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 4.8e-217 758.1 540 70.2
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 8.2e-217 757.3 537 69.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.4e-216 756.5 542 69.9
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 6.9e-216 754.2 546 68.9
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 9.1e-216 753.8 554 69.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 9.1e-216 753.8 520 71.0
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.2e-215 753.4 531 70.6
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.0e-215 752.7 509 73.5
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 5.9e-215 751.1 531 70.6
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 6.5e-214 747.7 509 73.1
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 8.5e-214 747.3 542 69.6
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.1e-213 746.9 531 69.7
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 4.2e-213 745.0 517 74.3
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 5.5e-213 744.6 512 70.7
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 5.5e-213 744.6 519 70.1
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.2e-212 743.4 516 71.5
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.1e-212 742.7 512 70.5
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 3.6e-212 741.9 543 68.5
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 6.1e-212 741.1 537 68.0
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 6.1e-212 741.1 542 68.8
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.0e-211 740.3 445 80.2
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.8e-211 739.6 529 69.2
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.8e-211 739.6 542 69.2
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.8e-211 739.6 530 70.2
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.1e-211 738.0 486 73.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 6.7e-211 737.6 544 67.6
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 8.8e-211 737.3 544 68.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.1e-210 736.9 534 69.9
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.1e-210 736.9 544 68.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.5e-210 736.5 452 78.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 4.4e-210 734.9 534 69.5
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 5.7e-210 734.6 538 66.9
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 6.3e-209 731.1 487 73.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.4e-208 729.9 539 67.9
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 7.0e-208 727.6 487 73.5
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 2.6e-207 725.7 504 72.2
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.3e-206 723.4 538 67.7
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.9e-206 722.2 517 70.2
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.8e-206 721.8 466 76.2
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-205 720.3 520 68.8
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.9e-205 719.5 506 71.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.2e-205 718.8 496 72.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.2e-205 718.4 610 62.5
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 9.4e-205 717.2 474 73.8
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.6e-204 716.5 529 68.4
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 6.1e-204 714.5 494 72.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 8.0e-204 714.1 529 68.4
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.0e-203 713.8 491 72.1
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.2e-201 706.1 510 69.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 8.2e-201 704.1 495 70.7
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 3.1e-200 702.2 509 69.0
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 4.1e-200 701.8 541 65.1
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.0e-200 701.0 466 74.7
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 4.5e-199 698.4 455 75.6
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.9e-199 698.0 509 68.4
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 3.2e-197 692.2 528 65.2
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.6e-196 688.7 489 70.1
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 3.3e-181 639.0 503 62.8
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 4.2e-181 638.6 371 82.5
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 7.5e-178 627.9 525 63.2
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.3e-171 606.3 414 70.3
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 7.3e-157 558.1 434 62.7
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.6e-156 557.0 383 72.6
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 5.8e-154 548.5 447 60.2
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.2e-152 542.7 411 68.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.6e-146 521.5 435 58.9
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 9.3e-144 514.6 406 66.0
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.1e-133 481.1 440 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.4e-120 437.6 494 48.2
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.1e-111 407.1 481 48.2
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.3e-105 387.9 477 46.1
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.5e-104 382.5 442 50.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 9.4e-104 381.7 517 45.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 6.7e-102 375.6 446 48.9
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 4.3e-101 372.9 448 48.4
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.6e-98 363.6 539 44.7
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 2.6e-98 363.6 441 46.9
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.8e-97 359.8 255 70.6
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.2e-88 330.1 528 42.4
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.4e-86 324.7 481 40.5
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 2.2e-81 307.4 176 81.8
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 4.2e-72 276.6 169 78.1
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.3e-48 197.2 213 53.5
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.5e-40 171.8 151 56.3
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 8.9e-38 162.5 138 60.1
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-35 155.6 131 58.8
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.6e-29 132.9 85 75.3
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 5.4e-27 126.7 141 49.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.6e-26 125.2 105 60.0
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 2.9e-20 104.4 104 54.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.8e-17 95.1 58 75.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 4.0e-14 84.0 134 41.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 9.9e-13 79.3 128 43.0
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.2e-12 78.2 134 39.6
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 9.3e-11 72.8 105 44.8
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.9e-09 67.4 130 40.8
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.4e-06 58.2 38 68.4


User provided reference genes

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