Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.7e-94 348.2 176 100.0
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.7e-75 286.2 181 81.8
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 9.8e-63 243.8 170 75.3
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 9.8e-63 243.8 170 75.9
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 5.8e-47 191.4 170 63.5
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 4.9e-46 188.3 169 65.7
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.4e-45 186.8 171 62.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-45 186.4 169 65.1
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.9e-45 186.4 169 65.1
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-44 183.7 169 63.3
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.0e-44 183.0 170 60.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.0e-44 183.0 169 63.3
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 4.6e-44 181.8 170 60.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 6.0e-44 181.4 169 60.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.3e-43 179.5 169 60.4
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.6e-43 177.9 170 58.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.7e-41 171.8 170 58.8
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 6.2e-41 171.4 174 56.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.4e-39 165.6 166 53.6
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 5.8e-39 164.9 179 53.6
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.2e-38 162.9 165 56.4
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 6.4e-38 161.4 163 57.7
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.1e-37 160.6 164 51.8
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.9e-37 159.8 171 53.8
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 4.1e-37 158.7 165 51.5
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 7.1e-37 157.9 169 52.7
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.6e-36 156.8 167 50.9
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.6e-36 155.2 163 52.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.6e-36 155.2 169 52.7
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-35 154.1 164 51.2
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.0e-35 154.1 155 51.6
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.3e-35 153.7 167 53.9
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.7e-35 153.3 169 52.1
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.3e-35 152.9 163 51.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.3e-35 152.9 162 52.5
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.0e-35 152.5 163 52.8
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.1e-34 150.6 165 48.5
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.5e-34 149.4 158 53.2
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.5e-34 149.4 169 49.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 3.3e-34 149.1 170 48.8
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.3e-34 148.7 164 48.8
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 4.3e-34 148.7 164 48.8
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.6e-34 148.3 165 49.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 5.6e-34 148.3 162 50.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-33 147.1 167 52.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.2e-33 147.1 169 50.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.8e-33 146.0 154 50.0
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 3.6e-33 145.6 166 49.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 6.2e-33 144.8 168 48.2
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 8.1e-33 144.4 172 50.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 8.1e-33 144.4 169 50.3
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.1e-32 144.1 154 49.4
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.1e-32 144.1 166 51.8
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.1e-32 144.1 166 51.8
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.4e-32 143.7 166 50.0
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.8e-32 143.3 164 49.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.8e-32 143.3 169 47.9
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.8e-32 143.3 168 50.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.1e-32 142.5 171 46.8
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 4.0e-32 142.1 166 49.4
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.0e-32 142.1 168 47.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.2e-32 141.7 166 50.0
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 6.8e-32 141.4 173 49.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 6.8e-32 141.4 164 47.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 6.8e-32 141.4 158 50.6
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 8.9e-32 141.0 166 48.2
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 8.9e-32 141.0 158 48.7
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 8.9e-32 141.0 168 47.6
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 8.9e-32 141.0 170 48.2
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.5e-31 140.2 166 48.2
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.0e-31 139.8 154 48.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-31 139.4 158 48.1
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.6e-31 139.4 164 50.0
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-31 138.7 164 47.6
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.4e-31 138.7 169 49.1
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 7.6e-31 137.9 164 47.0
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 7.6e-31 137.9 167 45.5
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 9.9e-31 137.5 166 46.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.3e-30 137.1 166 47.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 2.9e-30 136.0 139 51.8
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 3.8e-30 135.6 167 44.9
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.8e-30 135.6 167 45.5
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.8e-30 135.6 166 46.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 3.8e-30 135.6 160 46.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 3.8e-30 135.6 182 47.3
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 6.4e-30 134.8 168 46.4
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 6.4e-30 134.8 164 46.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 8.4e-30 134.4 165 44.8
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 8.4e-30 134.4 169 45.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-29 133.7 167 44.3
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.4e-29 133.7 173 47.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.4e-29 133.7 172 45.9
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.9e-29 133.3 171 44.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-29 133.3 145 49.0
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.9e-29 133.3 169 45.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 3.2e-29 132.5 166 44.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 5.4e-29 131.7 174 44.3
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 5.4e-29 131.7 166 48.8
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 7.1e-29 131.3 153 47.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 9.2e-29 131.0 167 47.9
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.6e-28 130.2 167 47.9
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.6e-28 130.2 183 46.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 3.5e-28 129.0 165 44.2
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.5e-28 129.0 168 41.1
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.6e-28 128.6 167 47.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 6.0e-28 128.3 165 44.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 3.0e-27 125.9 159 43.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.9e-27 125.6 157 43.3
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.1e-26 124.0 168 45.8
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.3e-26 122.5 162 45.1
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 7.3e-26 121.3 170 42.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 7.3e-26 121.3 163 42.9
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 2.8e-25 119.4 166 44.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-24 115.9 169 43.2
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 6.9e-24 114.8 169 42.6
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 9.0e-24 114.4 169 41.4
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 9.0e-24 114.4 126 49.2
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.5e-23 113.6 169 41.4
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 2.0e-23 113.2 160 44.4
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.6e-23 112.8 174 45.4
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 4.4e-23 112.1 174 45.4
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 5.8e-23 111.7 152 44.7
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 9.9e-23 110.9 172 43.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 9.9e-23 110.9 156 40.4
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.7e-22 110.2 127 48.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.7e-22 110.2 117 52.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 2.2e-22 109.8 167 38.9
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 6.4e-22 108.2 171 39.8
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 4.2e-21 105.5 149 43.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 5.4e-21 105.1 172 39.5
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 5.4e-21 105.1 160 40.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-20 103.6 116 48.3
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.6e-20 103.6 160 42.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-19 99.8 104 51.0
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.9e-19 99.0 103 53.4
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.5e-18 97.1 125 43.2
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-18 96.7 108 50.9
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 9.0e-16 87.8 157 35.0
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.0e-15 86.7 159 36.5
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 5.8e-15 85.1 71 62.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 7.6e-15 84.7 130 41.5
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 7.6e-15 84.7 170 32.4
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 9.9e-15 84.3 165 32.7
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.3e-10 68.9 107 42.1
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 6.2e-09 65.1 67 55.2
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 1.1e-08 64.3 69 52.2
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 1.1e-08 64.3 69 52.2
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 3.1e-08 62.8 56 62.5
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.2e-07 60.8 56 48.2
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.4e-07 59.3 55 58.2
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 4.5e-07 58.9 68 48.5
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 2.2e-06 56.6 159 29.6


User provided reference genes

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