Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 0.0e+00 1077.4 551 100.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 2.7e-308 1061.2 551 98.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.6e-297 1024.2 552 94.9
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 5.4e-293 1010.4 550 94.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.9e-290 1001.9 551 92.6
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 7.3e-290 1000.0 552 92.4
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.6e-271 938.3 552 86.8
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.7e-268 928.3 554 85.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.3e-267 926.0 556 86.2
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 6.6e-267 923.7 562 85.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 6.6e-267 923.7 549 85.2
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.1e-266 922.9 555 85.8
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 5.6e-266 920.6 561 84.8
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 4.5e-263 911.0 554 86.1
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 9.3e-253 876.7 551 79.5
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.5e-252 874.8 551 79.5
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.8e-251 872.5 551 79.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.3e-249 866.3 567 77.2
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 8.2e-249 863.6 551 79.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.9e-245 852.4 561 75.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 4.6e-244 847.8 552 76.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.0e-243 846.7 553 76.7
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.1e-242 843.2 551 75.9
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.9e-242 842.4 551 76.8
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.3e-242 841.6 549 76.1
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 4.3e-242 841.3 552 75.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 4.3e-242 841.3 556 76.4
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 4.3e-242 841.3 573 74.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 5.7e-242 840.9 549 75.8
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 5.7e-242 840.9 565 75.6
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 9.7e-242 840.1 552 75.7
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 2.2e-241 839.0 558 76.5
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.2e-241 839.0 551 77.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 6.3e-241 837.4 551 74.4
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 8.2e-241 837.0 551 76.2
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 8.2e-241 837.0 553 75.0
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.8e-240 835.9 570 75.1
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.1e-240 835.1 580 72.8
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.1e-240 834.7 551 75.1
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.1e-240 834.7 551 75.5
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 6.9e-240 833.9 554 76.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.0e-239 832.4 551 74.2
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.0e-239 832.4 552 74.8
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 7.7e-239 830.5 596 71.1
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 7.7e-239 830.5 551 75.1
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.7e-239 830.5 552 74.5
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.7e-238 829.3 514 77.6
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.9e-238 828.6 558 74.9
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.4e-237 826.2 548 75.2
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.5e-237 825.5 550 75.1
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.5e-237 825.5 551 75.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 7.2e-237 823.9 549 75.2
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.2e-236 823.2 551 74.4
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.1e-236 822.4 548 75.2
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.0e-235 820.1 540 76.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.0e-235 820.1 554 72.9
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 2.3e-235 818.9 577 73.5
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.9e-235 818.1 559 73.3
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 5.1e-235 817.8 561 74.0
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.7e-235 817.4 556 74.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.0e-234 815.8 488 80.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.6e-234 815.5 551 75.1
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.2e-233 812.4 577 70.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 4.1e-232 808.1 600 70.3
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.5e-231 806.2 551 73.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 6.5e-230 800.8 526 75.7
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.1e-229 800.0 551 74.2
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.2e-229 798.5 515 76.1
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 3.9e-227 791.6 556 73.0
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.7e-225 786.2 667 63.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.0e-223 779.2 587 69.8
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.0e-222 776.9 554 71.1
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.9e-221 772.7 554 70.4
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 5.5e-221 771.2 462 80.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 7.2e-221 770.8 537 70.6
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 2.2e-214 749.2 494 76.5
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.6e-212 741.9 609 64.2
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.5e-210 736.5 529 71.1
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 2.0e-210 736.1 443 79.7
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 4.4e-210 734.9 566 68.2
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 7.0e-208 727.6 551 69.0
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.3e-206 723.4 601 64.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.2e-206 722.6 486 74.1
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 3.8e-206 721.8 540 69.4
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.5e-205 719.9 506 69.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 7.2e-205 717.6 549 68.3
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 5.7e-202 708.0 496 71.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.7e-201 705.3 502 68.7
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 8.3e-201 704.1 440 78.0
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.8e-200 703.0 492 70.7
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.1e-200 701.8 587 64.9
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.6e-196 689.9 486 72.2
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 3.3e-189 665.6 532 61.3
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.3e-189 665.6 488 71.1
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.8e-186 654.1 425 73.9
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.9e-185 652.5 504 63.9
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.7e-183 646.0 546 63.0
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.1e-181 640.6 508 62.8
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 4.0e-179 632.1 423 72.3
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.4e-178 629.0 515 65.0
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 4.4e-178 628.6 559 61.5
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.1e-171 607.4 471 66.5
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-169 600.5 551 60.3
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 8.6e-166 587.8 454 68.5
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.1e-164 583.2 352 83.2
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.8e-162 575.1 322 91.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-157 560.8 486 58.0
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 9.0e-155 551.2 485 58.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.5e-154 550.4 370 77.3
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 8.7e-150 534.6 322 82.6
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 3.5e-135 486.1 293 82.9
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 8.7e-134 481.5 478 47.9
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.4e-117 425.2 271 79.7
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.0e-110 403.3 443 50.1
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.2e-108 397.1 257 76.3
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 5.9e-106 389.0 394 57.1
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.4e-99 367.9 228 78.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.3e-88 330.1 205 79.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.5e-80 304.7 211 71.1
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.0e-77 294.3 183 78.7
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 7.0e-75 285.8 472 37.5
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.3e-73 281.6 189 72.0
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 3.3e-72 276.9 215 65.1
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 6.2e-71 272.7 212 64.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.9e-64 251.1 243 58.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.2e-60 237.7 135 77.0
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 7.3e-56 222.6 139 77.7
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.1e-51 208.8 254 48.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.2e-47 195.3 467 32.3
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.1e-42 177.9 361 34.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 2.8e-39 167.5 89 83.1
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 2.8e-39 167.5 89 83.1
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.8e-38 164.9 134 61.9
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.6e-34 151.8 146 55.5
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.8e-31 141.0 123 60.2
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 6.2e-31 139.8 117 66.7
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 6.9e-30 136.3 151 55.0
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.0e-29 134.8 114 65.8
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 4.6e-26 123.6 140 53.6
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.7e-25 119.8 69 79.7
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 9.0e-22 109.4 66 86.4
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 7.6e-21 106.3 106 59.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.0e-20 105.9 84 61.9
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-19 102.1 64 76.6
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.2e-19 100.9 119 47.1
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.2e-18 99.0 52 88.5
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 3.5e-18 97.4 72 70.8
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 3.5e-18 97.4 57 87.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 8.2e-15 86.3 61 72.1
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.0e-13 81.6 58 72.4
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.6e-10 72.0 72 56.9
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.9e-10 69.7 87 48.3
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.8e-09 68.6 46 73.9
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-09 67.0 51 62.7
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 5.1e-09 67.0 87 47.1
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 6.7e-09 66.6 87 46.0
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.5e-08 64.7 51 60.8
A10p05650 Brassica napus HOM05D016273 ORTHO05D019880 9.7e-08 62.8 83 45.8
BraA10t42826Z Brassica rapa HOM05D016273 ORTHO05D019880 9.7e-08 62.8 83 45.8
C03p82190 Brassica napus HOM05D016273 ORTHO05D019880 1.3e-07 62.4 83 45.8
BolC3t20533H Brassica oleracea HOM05D016273 ORTHO05D019880 1.3e-07 62.4 83 45.8
BolC1t02154H Brassica oleracea HOM05D016273 ORTHO05D106340 6.3e-07 60.1 89 46.1
C01p22240 Brassica napus HOM05D016273 ORTHO05D019880 1.1e-06 59.3 78 44.9
BcaB06g27551 Brassica carinata HOM05D004684 ORTHO05D094740 4.1e-06 57.4 90 38.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.9e-06 56.6 43 60.5


User provided reference genes

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