Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.1e-212 743.0 388 100.0
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.0e-152 543.9 367 76.0
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 1.4e-125 453.8 385 64.7
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 4.9e-123 445.3 386 62.7
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 5.1e-104 382.1 336 61.0
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.3e-91 340.9 253 67.6
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 7.1e-82 308.5 308 54.9
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 4.5e-60 236.1 264 48.9
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 4.5e-60 236.1 264 48.9
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 4.5e-60 236.1 264 48.9
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-59 234.2 266 48.9
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.7e-59 234.2 266 47.4
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.2e-59 233.8 268 46.6
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 2.2e-59 233.8 268 48.1
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 5.0e-59 232.6 266 47.4
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 5.0e-59 232.6 266 47.4
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.4e-58 231.1 266 47.0
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.5e-58 230.3 265 46.8
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 3.2e-58 229.9 286 43.7
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 3.2e-58 229.9 286 43.7
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 4.2e-58 229.6 266 46.2
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 7.2e-58 228.8 268 47.4
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 7.2e-58 228.8 268 47.4
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 2.1e-57 227.3 335 46.0
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 2.7e-57 226.9 288 44.8
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.0e-56 223.4 268 45.5
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 3.9e-56 223.0 268 45.9
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 6.7e-56 222.2 272 46.3
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.6e-55 220.3 268 46.3
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 6.3e-54 215.7 268 46.6
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 5.3e-53 212.6 268 42.9
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 5.3e-53 212.6 263 42.6
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 7.0e-53 212.2 289 40.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 9.1e-53 211.8 288 39.6
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.2e-52 211.5 319 41.1
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 1.2e-52 211.5 268 42.5
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.2e-52 211.5 270 41.1
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 4.5e-52 209.5 288 40.6
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 5.9e-52 209.1 311 40.8
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 5.9e-52 209.1 288 38.9
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-51 208.0 268 41.4
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.7e-51 207.6 289 40.8
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 1.7e-51 207.6 266 42.5
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 2.9e-51 206.8 268 43.7
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 3.8e-51 206.5 304 39.8
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.8e-51 206.5 272 43.4
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 3.8e-51 206.5 307 39.1
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 5.0e-51 206.1 292 40.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.0e-51 206.1 263 41.8
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 5.0e-51 206.1 240 43.8
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 6.5e-51 205.7 273 41.8
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 6.5e-51 205.7 307 40.4
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 6.5e-51 205.7 309 41.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.5e-51 205.7 270 44.4
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 8.5e-51 205.3 304 39.8
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.5e-50 204.5 272 41.9
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 1.5e-50 204.5 306 40.5
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.9e-50 204.1 310 38.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.9e-50 204.1 237 43.9
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.9e-50 204.1 264 40.9
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 2.5e-50 203.8 288 38.9
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 3.2e-50 203.4 266 41.7
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 3.2e-50 203.4 288 38.9
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 4.2e-50 203.0 268 41.0
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 5.5e-50 202.6 267 41.9
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 7.2e-50 202.2 274 42.3
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 7.2e-50 202.2 272 40.1
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 7.2e-50 202.2 274 41.6
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 9.4e-50 201.8 273 41.4
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.2e-49 201.4 263 41.4
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.6e-49 201.1 279 39.1
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.6e-49 201.1 267 41.2
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 2.1e-49 200.7 313 38.0
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.7e-49 200.3 302 40.1
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 2.7e-49 200.3 308 39.0
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.6e-49 199.9 267 43.4
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 3.6e-49 199.9 293 39.2
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 6.1e-49 199.1 311 39.5
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 8.0e-49 198.7 268 42.2
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.0e-48 198.4 227 50.2
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.0e-48 198.4 307 37.5
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.0e-48 198.4 265 41.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.8e-48 197.6 315 37.5
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 3.0e-48 196.8 267 38.2
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 3.9e-48 196.4 331 36.6
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 8.8e-48 195.3 302 38.1
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 8.8e-48 195.3 322 37.6
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 8.8e-48 195.3 325 35.7
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 2.6e-47 193.7 271 39.9
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 2.6e-47 193.7 231 42.4
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 4.4e-47 193.0 230 43.9
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 4.4e-47 193.0 238 43.7
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 4.4e-47 193.0 290 38.6
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 9.7e-47 191.8 270 39.3
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 9.7e-47 191.8 270 40.7
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.7e-46 191.0 241 41.9
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.7e-46 191.0 327 37.3
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.2e-46 190.7 336 36.0
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.8e-46 189.5 264 41.3
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.1e-45 188.3 320 36.9
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.1e-45 188.3 325 36.3
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 1.4e-45 188.0 270 38.5
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 9.1e-45 185.3 249 40.6
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 3.5e-44 183.3 291 38.5
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 4.5e-44 183.0 321 35.5
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 7.7e-44 182.2 232 43.5
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 7.7e-44 182.2 269 39.8
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 1.0e-43 181.8 268 38.8
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.0e-43 181.8 218 44.0
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 8.5e-43 178.7 251 40.2
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.9e-42 177.6 312 36.9
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 1.9e-42 177.6 337 33.8
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.3e-40 170.6 231 42.0
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 2.7e-33 147.1 275 32.7
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.2e-31 141.7 276 31.5
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 9.8e-31 138.7 182 41.2
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 3.7e-30 136.7 385 29.1
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.8e-29 134.4 128 50.0
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 6.6e-27 125.9 325 28.3
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.0e-24 118.6 159 45.9
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 4.4e-23 113.2 162 37.0
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 7.5e-23 112.5 170 37.6
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 9.8e-23 112.1 239 29.7
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 8.3e-22 109.0 163 36.8
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 7.3e-18 95.9 153 37.9
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 2.1e-17 94.4 292 23.3
Sp1g35470 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.5e-15 88.2 91 58.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 7.5e-15 85.9 88 46.6
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-14 85.1 131 42.0
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.2e-12 78.6 123 39.0
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.6e-12 78.2 104 41.3
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.8e-12 75.9 87 47.1
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 5.6e-10 69.7 232 24.1
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 4.7e-09 66.6 250 23.2
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 3.7e-06 57.0 109 30.3


User provided reference genes

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