Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.6e-161 572.8 298 100.0
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.6e-142 508.4 298 89.6
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 9.2e-122 440.7 285 81.4
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.7e-115 419.9 289 79.6
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 8.4e-107 391.0 289 76.5
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 3.2e-106 389.0 301 72.1
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-104 382.5 304 71.4
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-103 380.6 304 71.1
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 8.1e-102 374.4 302 70.5
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 4.0e-101 372.1 304 69.7
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 6.9e-101 371.3 302 70.2
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.0e-96 357.5 276 72.8
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 7.6e-84 314.7 279 65.2
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 7.2e-82 308.1 279 64.5
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.5e-79 300.4 305 60.0
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.3e-79 299.3 199 83.9
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 9.7e-79 297.7 308 58.1
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 8.2e-78 294.7 297 59.3
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 4.5e-76 288.9 310 56.8
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 5.9e-76 288.5 310 57.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.2e-75 286.6 291 58.8
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 3.8e-75 285.8 302 56.6
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.5e-74 283.1 327 54.7
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 7.2e-74 281.6 301 57.8
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 7.2e-74 281.6 301 57.8
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 6.1e-73 278.5 301 57.8
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.4e-72 277.3 307 54.7
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 3.9e-72 275.8 292 56.8
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 2.3e-64 250.0 199 71.9
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.3e-59 234.2 292 51.0
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-57 227.6 184 71.2
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 5.0e-51 205.7 175 67.4
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 5.0e-51 205.7 175 67.4
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-48 196.4 170 66.5
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.1e-41 173.7 141 68.8
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 8.0e-41 171.8 141 68.1
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 8.0e-41 171.8 140 68.6
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.7e-35 154.1 331 33.8
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 9.5e-34 148.3 182 51.1
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 1.6e-33 147.5 117 67.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 8.9e-32 141.7 326 33.4
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 4.4e-31 139.4 286 33.9
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 4.9e-30 136.0 294 32.7
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 8.3e-30 135.2 241 37.8
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-29 134.8 142 57.0
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-29 134.8 142 57.0
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.4e-29 134.4 261 34.9
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 1.8e-29 134.0 288 33.3
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 2.4e-29 133.7 288 31.9
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 2.4e-29 133.7 294 33.3
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 3.2e-29 133.3 268 35.1
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 4.1e-29 132.9 320 32.5
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 7.0e-29 132.1 292 32.5
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 9.2e-29 131.7 319 32.3
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 1.6e-28 131.0 298 31.5
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 2.0e-28 130.6 261 35.2
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 5.9e-28 129.0 310 31.9
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 7.8e-28 128.6 289 33.2
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 1.3e-27 127.9 291 32.0
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 2.3e-27 127.1 311 31.5
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 2.3e-27 127.1 242 33.1
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 3.9e-27 126.3 276 33.0
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 5.0e-27 125.9 317 31.9
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.1e-26 124.8 279 34.4
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.5e-26 124.4 226 35.4
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.9e-26 124.0 241 33.2
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 3.3e-26 123.2 264 33.3
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 3.3e-26 123.2 245 34.7
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 3.3e-26 123.2 303 32.0
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.6e-26 122.5 245 34.3
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 9.5e-26 121.7 267 33.0
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 9.5e-26 121.7 318 32.7
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 1.2e-25 121.3 329 30.4
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 1.2e-25 121.3 302 32.5
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 1.2e-25 121.3 309 28.5
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 1.2e-25 121.3 278 32.4
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 1.6e-25 120.9 260 34.2
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 1.6e-25 120.9 218 37.2
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 2.1e-25 120.6 310 29.0
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 2.1e-25 120.6 262 33.6
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 2.8e-25 120.2 267 34.1
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 3.6e-25 119.8 274 32.1
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 4.7e-25 119.4 282 33.7
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 4.7e-25 119.4 317 29.3
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 4.7e-25 119.4 325 29.5
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 8.0e-25 118.6 365 28.5
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.0e-24 118.2 244 34.8
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.4e-24 117.9 271 34.3
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 1.4e-24 117.9 291 32.6
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 1.8e-24 117.5 288 32.3
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.8e-24 117.5 365 28.2
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.3e-24 117.1 281 29.9
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.3e-24 117.1 319 31.0
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 8.9e-24 115.2 240 35.0
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 8.9e-24 115.2 369 28.2
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-23 114.8 368 28.0
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.5e-23 114.4 272 31.2
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 2.0e-23 114.0 301 30.2
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.6e-23 113.6 292 30.8
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.4e-23 113.2 373 27.6
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 3.4e-23 113.2 250 32.4
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.4e-23 112.8 369 28.2
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 7.5e-23 112.1 263 31.6
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 1.3e-22 111.3 253 32.4
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 1.7e-22 110.9 280 28.9
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.2e-22 110.5 296 32.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 2.2e-22 110.5 257 31.1
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.9e-22 110.2 272 30.5
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 3.7e-22 109.8 273 32.6
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 3.7e-22 109.8 330 28.5
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 3.7e-22 109.8 275 32.0
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 4.9e-22 109.4 317 31.2
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 8.3e-22 108.6 231 33.3
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 8.3e-22 108.6 281 28.8
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 8.3e-22 108.6 280 28.6
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.4e-21 107.8 290 30.3
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.4e-21 107.8 276 29.7
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.9e-21 107.5 280 28.6
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.4e-21 107.1 282 28.0
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 2.4e-21 107.1 244 31.1
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 4.1e-21 106.3 294 30.3
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 9.2e-21 105.1 229 31.9
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 2.0e-20 104.0 270 30.7
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 2.0e-20 104.0 278 29.9
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.3e-19 101.3 248 31.0
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 1.5e-18 97.8 273 30.4
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 4.3e-18 96.3 267 28.5
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 5.6e-18 95.9 264 32.2
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 7.3e-18 95.5 247 30.0
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 7.3e-18 95.5 242 30.2
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 1.2e-17 94.7 220 30.0
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 1.2e-17 94.7 275 29.8
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.8e-17 93.6 291 29.2
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 6.2e-17 92.4 249 32.5
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 5.2e-16 89.4 285 28.8
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 6.8e-16 89.0 196 32.1
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.2e-15 88.2 188 32.4
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 1.5e-15 87.8 84 64.3
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 3.7e-14 83.2 256 28.9
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.9e-13 80.9 241 27.8
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 2.7e-12 77.0 251 29.5
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.7e-11 74.3 229 29.7
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 3.3e-10 70.1 262 29.0
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 4.3e-10 69.7 257 26.8
BcaB04g17433 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-09 68.2 64 65.6
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.2e-08 62.8 157 32.5


User provided reference genes

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