Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 1.2e-43 179.5 90 100.0
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.5e-43 179.1 90 98.9
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 5.8e-43 177.2 90 97.8
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 2.2e-42 175.3 90 95.6
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 94.4
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 94.4
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 94.4
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 94.4
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 6.4e-42 173.7 90 93.3
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 1.1e-41 172.9 90 94.4
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 93.3
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 7.0e-41 170.2 90 93.3
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 3.9e-39 164.5 90 90.0
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 2.5e-38 161.8 87 90.8
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 7.3e-38 160.2 91 89.0
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 7.3e-38 160.2 91 89.0
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 9.5e-38 159.8 97 84.5
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 1.6e-37 159.1 91 89.0
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 1.6e-37 159.1 90 83.3
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 1.6e-37 159.1 86 90.7
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 2.1e-37 158.7 90 84.4
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 2.8e-37 158.3 90 83.3
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 2.8e-37 158.3 87 86.2
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 82.2
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 3.1e-36 154.8 87 85.1
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 3.1e-36 154.8 87 85.1
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.1e-36 154.8 90 80.0
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 4.0e-36 154.5 90 82.2
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 6.8e-36 153.7 90 78.9
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 82.2
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 1.2e-35 152.9 87 82.8
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 2.0e-35 152.1 88 79.5
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.6e-35 151.8 87 83.9
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 83.3
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 82.2
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.4e-35 151.4 90 80.0
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 78.9
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 5.8e-35 150.6 90 77.8
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 9.8e-35 149.8 90 78.9
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 1.7e-34 149.1 89 79.8
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 78.9
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 2.2e-34 148.7 94 80.9
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 2.2e-34 148.7 87 80.5
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 76.7
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 2.9e-34 148.3 87 80.5
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 2.9e-34 148.3 90 78.9
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 2.9e-34 148.3 90 77.8
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 2.9e-34 148.3 90 78.9
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 2.9e-34 148.3 87 82.8
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 2.9e-34 148.3 87 80.5
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 77.8
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 4.9e-34 147.5 88 78.4
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 77.8
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 76.7
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 75.6
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 77.8
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 88 79.5
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 75.6
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 3.2e-33 144.8 100 73.0
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 77.8
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 76.7
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 4.1e-33 144.4 87 77.0
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 74.4
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 75.6
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 9.2e-33 143.3 84 79.8
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 76.7
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 72.2
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 72.2
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 74.4
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 76.7
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 1.6e-32 142.5 89 73.0
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 72.2
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.6e-32 142.5 87 79.3
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 1.6e-32 142.5 88 76.1
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 74.4
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 74.4
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 2.1e-32 142.1 88 75.0
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 73.3
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 3.5e-32 141.4 86 79.1
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 6.0e-32 140.6 86 79.1
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 73.3
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 1.3e-31 139.4 90 73.3
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 72.2
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 3.9e-31 137.9 90 75.6
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 72.2
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 73.3
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 6.6e-31 137.1 84 78.6
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 8.6e-31 136.7 90 70.0
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 8.6e-31 136.7 89 73.0
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 1.9e-30 135.6 90 70.0
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 4.3e-30 134.4 90 68.9
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 67.8
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 67.8
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 1.6e-29 132.5 90 71.1
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 3.6e-29 131.3 84 75.0
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 2.3e-28 128.6 86 74.4
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 3.1e-28 128.3 86 73.3
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 4.0e-28 127.9 90 70.0
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 5.2e-28 127.5 76 76.3
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 1.2e-27 126.3 70 85.7
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 5.8e-27 124.0 87 67.8
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 9.9e-27 123.2 69 84.1
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 1.7e-26 122.5 70 78.6
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 2.2e-26 122.1 88 71.6
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 2.2e-26 122.1 121 52.9
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 4.9e-26 120.9 97 61.9
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 4.9e-26 120.9 70 82.9
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.3e-23 112.8 71 77.5
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 1.7e-23 112.5 63 81.0
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 2.3e-23 112.1 68 76.5
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.9e-23 111.3 66 80.3
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 5.2e-20 100.9 57 82.5
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 6.8e-20 100.5 69 65.2
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 1.5e-19 99.4 58 79.3
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 1.5e-19 99.4 60 75.0
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 9.9e-19 96.7 71 69.0
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 1.3e-18 96.3 86 59.3
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 3.8e-18 94.7 89 55.1
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 2.3e-15 85.5 93 48.4
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 6.6e-15 84.0 51 76.5
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 4.7e-13 77.8 90 48.9
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 1.3e-10 69.7 53 64.2
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 3.2e-09 65.1 47 63.8
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 7.8e-08 60.5 35 82.9
Aa31LG11G3540 Aethionema arabicum HOM05D006090 ORTHO05D007600 5.1e-07 57.8 31 77.4
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 5.1e-07 57.8 41 70.7
AL3G18490 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.1e-06 56.6 40 65.0
AUR62016546 Chenopodium quinoa HOM05D006090 ORTHO05D007600 1.1e-06 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 2.5e-06 55.5 33 75.8


User provided reference genes

Program Settings