Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G47970 Arabidopsis thaliana HOM05D008359 ORTHO05D010300 2.1e-37 159.8 199 100.0
AL1G54480 Arabidopsis lyrata HOM05D008359 ORTHO05D010300 4.5e-32 142.1 199 97.0
CARHR037590 Cardamine hirsuta HOM05D008359 ORTHO05D010300 3.1e-25 119.4 172 86.0
Sp1g34910 Schrenkiella parvula HOM05D008359 ORTHO05D010300 3.6e-21 105.9 106 92.5
Carub.0001s3705 Capsella rubella HOM05D008359 ORTHO05D010300 6.8e-20 101.7 166 90.4
BolC6t35360H Brassica oleracea HOM05D008359 ORTHO05D010300 1.5e-19 100.5 109 88.1
A06p04780 Brassica napus HOM05D008359 ORTHO05D010300 2.0e-19 100.1 106 87.7
BraA06t23682Z Brassica rapa HOM05D008359 ORTHO05D010300 1.7e-18 97.1 107 86.9
BcaC08g42993 Brassica carinata HOM05D008359 ORTHO05D010300 2.0e-16 90.1 53 92.5
Aa31LG10G5820 Aethionema arabicum HOM05D000167 ORTHO05D000465 8.6e-15 84.7 96 89.6
C06p02350 Brassica napus HOM05D008359 ORTHO05D010300 4.3e-14 82.4 53 86.8
CARHR092430 Cardamine hirsuta HOM05D014329 ORTHO05D014763 4.9e-10 68.9 169 47.3
Prupe.1G113500 Prunus persica HOM05D008359 ORTHO05D010300 6.4e-10 68.6 89 82.0
CANSAT78G0680 Cannabis sativa HOM05D008359 ORTHO05D010300 7.0e-09 65.1 86 82.6
BcaB07g33802 Brassica carinata HOM05D008359 ORTHO05D010300 9.2e-09 64.7 55 76.4
MD16G1149800 Malus domestica HOM05D008359 ORTHO05D010300 4.6e-08 62.4 33 93.9
Haze_01345 Corylus avellana HOM05D008359 ORTHO05D010300 1.0e-07 61.2 33 90.9
SGA_v2.0_scaffold246G44799 Striga asiatica HOM05D008359 ORTHO05D010300 1.0e-07 61.2 40 85.0
Atru.chr4.3060 Acer truncatum HOM05D008359 ORTHO05D010300 1.3e-07 60.8 88 80.7
FAN07G0737 Fragaria x ananassa HOM05D008359 ORTHO05D010300 1.7e-07 60.5 35 82.9
Nitab4.5_0000289g0010 Nicotiana tabacum HOM05D008359 ORTHO05D010300 1.7e-07 60.5 34 88.2
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 1.7e-07 60.5 33 90.9
FAN12G0153 Fragaria x ananassa HOM05D008359 ORTHO05D010300 3.9e-07 59.3 82 81.7
MBI19_g03271_MAGBIO Magnolia biondii HOM05D008359 ORTHO05D010300 5.0e-07 58.9 37 83.8
SGA_v2.0_scaffold227G43229 Striga asiatica HOM05D008359 ORTHO05D010300 5.0e-07 58.9 38 81.6
CiPaw.02G072800 Carya illinoinensis HOM05D008359 ORTHO05D010300 8.6e-07 58.2 35 82.9
PGR031G3777 Punica granatum HOM05D008359 ORTHO05D010300 1.1e-06 57.8 35 85.7
RcHm_v2.0_Chr4g0425941 Rosa chinensis HOM05D008359 ORTHO05D010300 1.5e-06 57.4 32 87.5
C05p49300 Brassica napus HOM05D014329 ORTHO05D014763 1.9e-06 57.0 53 67.9
BcaC05g28822 Brassica carinata HOM05D014329 ORTHO05D014763 2.5e-06 56.6 43 72.1
Thecc.04G305300 Theobroma cacao HOM05D008359 ORTHO05D010300 2.5e-06 56.6 31 90.3
HanXRQChr01g0022331 Helianthus annuus HOM05D008359 ORTHO05D010300 3.3e-06 56.2 38 78.9
Lj3P834T33 Lonicera japonica HOM05D008359 ORTHO05D010300 3.3e-06 56.2 28 96.4
Nitab4.5_0004298g0050 Nicotiana tabacum HOM05D008359 ORTHO05D010300 3.3e-06 56.2 35 82.9
Oeu044729.1 Olea europaea HOM05D008359 ORTHO05D010300 3.3e-06 56.2 29 93.1
THA.LOC104820317 Tarenaya hassleriana HOM05D008359 ORTHO05D010300 3.3e-06 56.2 141 56.0
ECA246G4255 Erigeron canadensis HOM05D008359 ORTHO05D010300 5.6e-06 55.5 33 81.8
MSTRG.27929 Avicennia marina HOM05D008359 ORTHO05D010300 9.5e-06 54.7 40 77.5
Migut.N00029 Erythranthe guttata HOM05D008359 ORTHO05D010300 9.5e-06 54.7 53 69.8
Sabra10G0114500 Salix brachista HOM05D008359 ORTHO05D010300 9.5e-06 54.7 29 89.7
unitig_749.g13356 Utricularia gibba HOM05D008359 ORTHO05D010300 9.5e-06 54.7 57 63.2


User provided reference genes

Program Settings