Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.1e-125 451.4 232 100.0
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.4e-122 443.0 232 98.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.8e-118 428.7 230 95.7
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.1e-113 412.5 232 88.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.1e-113 411.0 232 88.8
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 6.7e-112 407.5 233 88.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 6.7e-112 407.5 233 88.0
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-111 406.8 232 87.9
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-111 406.0 233 87.6
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-111 406.0 233 87.6
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.0e-111 406.0 233 87.6
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.4e-95 351.7 195 91.3
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.1e-93 345.1 232 75.9
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-91 339.7 232 73.7
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.0e-91 338.2 232 73.3
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.3e-90 334.3 232 73.3
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 7.3e-90 334.3 232 72.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 9.5e-90 334.0 232 72.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-88 330.1 230 71.3
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 5.2e-88 328.2 230 71.3
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 5.2e-88 328.2 230 71.3
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 4.4e-87 325.1 230 70.4
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 4.4e-87 325.1 230 70.4
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.3e-86 323.6 230 70.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.0e-85 317.8 232 71.1
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 70.4
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.6e-83 310.8 223 69.5
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 3.6e-81 305.4 221 67.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-76 289.7 222 64.4
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.3e-75 287.0 219 63.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 3.9e-75 285.4 228 64.9
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 3.9e-75 285.4 228 64.9
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.3e-74 282.3 223 63.2
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 9.5e-74 280.8 219 62.6
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 9.5e-74 280.8 215 64.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-73 280.4 215 64.2
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-73 280.0 221 60.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-73 280.0 218 63.8
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.6e-73 280.0 214 64.0
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.6e-73 280.0 222 61.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.1e-73 279.6 218 63.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.8e-73 279.3 215 62.8
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.6e-73 278.9 218 64.2
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 3.6e-73 278.9 228 59.6
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 4.7e-73 278.5 213 63.4
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 6.2e-73 278.1 229 60.3
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 6.2e-73 278.1 226 61.5
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 8.1e-73 277.7 229 60.3
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.1e-73 277.7 230 61.7
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.4e-72 276.9 226 61.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.4e-72 276.9 214 61.7
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.4e-72 276.9 226 62.4
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-72 276.6 220 61.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 1.8e-72 276.6 218 61.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-72 275.8 230 61.3
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-72 275.8 230 61.3
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.0e-72 275.4 229 61.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 4.0e-72 275.4 220 61.4
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 6.8e-72 274.6 220 61.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 6.8e-72 274.6 216 63.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.8e-72 274.6 219 62.6
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.2e-71 273.9 232 59.1
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.5e-71 273.5 230 60.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.5e-71 273.5 221 61.5
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.5e-71 273.5 218 63.3
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.5e-71 273.5 218 63.3
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.6e-71 272.7 218 61.5
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 4.4e-71 271.9 230 59.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 4.4e-71 271.9 215 62.3
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 4.4e-71 271.9 218 61.5
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 5.8e-71 271.6 214 61.7
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 5.8e-71 271.6 212 64.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 7.5e-71 271.2 215 60.9
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.5e-71 271.2 219 63.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 9.9e-71 270.8 214 61.2
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.3e-70 270.4 222 60.8
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.3e-70 270.4 219 60.7
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.7e-70 270.0 214 63.6
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.7e-70 270.0 212 62.3
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.2e-70 269.6 220 61.4
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 4.9e-70 268.5 218 58.7
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.4e-69 266.2 215 60.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.4e-69 266.2 218 60.1
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 7.1e-69 264.6 211 61.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 9.2e-69 264.2 222 59.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.2e-68 263.8 215 60.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.6e-68 263.5 222 59.5
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.7e-68 262.7 222 59.5
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 3.5e-68 262.3 227 55.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 3.5e-68 262.3 226 59.3
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 4.6e-68 261.9 222 59.0
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 4.6e-68 261.9 217 60.4
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.0e-68 261.5 226 58.8
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 6.0e-68 261.5 215 62.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 7.8e-68 261.2 223 57.0
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.7e-67 260.0 226 58.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.9e-67 258.8 248 54.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.9e-67 258.8 218 56.9
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 6.6e-67 258.1 227 58.6
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-66 256.9 221 58.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 5.6e-66 255.0 222 58.1
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 7.3e-66 254.6 220 57.7
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.2e-65 253.8 219 58.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.6e-65 252.3 224 56.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.0e-63 246.5 188 64.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 7.6e-63 244.6 220 51.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.7e-62 243.4 223 57.8
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.9e-62 242.7 197 62.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.9e-62 242.7 193 59.1
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 3.8e-62 242.3 217 58.5
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.8e-62 242.3 250 52.4
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 6.4e-62 241.5 205 60.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 6.4e-62 241.5 224 55.4
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.2e-60 237.3 221 56.1
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.2e-60 237.3 279 49.5
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.6e-60 236.9 195 61.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-59 233.8 244 52.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.7e-59 233.4 222 54.5
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 3.0e-59 232.6 219 52.5
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.9e-59 232.3 210 58.6
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.9e-59 232.3 210 58.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 8.7e-59 231.1 215 54.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.5e-58 230.3 180 66.1
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 4.3e-58 228.8 217 54.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 9.6e-58 227.6 183 60.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.9e-54 216.1 190 52.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 3.8e-54 215.7 191 56.0
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.9e-53 213.4 204 51.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 9.3e-53 211.1 218 50.5
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 5.6e-50 201.8 154 61.0
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.3e-49 200.7 156 61.5
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.4e-48 197.2 152 61.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.5e-47 193.7 218 48.2
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.3e-46 190.7 150 62.0
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-45 186.4 218 46.3
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 6.0e-44 181.8 150 56.0
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.3e-43 179.9 169 56.8
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.1e-41 173.3 232 42.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.8e-41 172.9 217 44.2
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.4e-40 170.6 221 41.2
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-40 169.5 217 44.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 6.9e-40 168.3 215 42.8
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.3e-37 157.9 230 44.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-36 157.5 120 64.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-32 144.4 114 59.6
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.4e-31 139.4 121 56.2
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 8.4e-30 134.8 193 38.3
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 3.9e-27 125.9 89 66.3
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 9.7e-26 121.3 92 62.0
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-25 120.9 124 51.6
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.5e-23 114.0 148 39.2
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 7.6e-23 111.7 195 35.9
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.4e-18 95.1 71 69.0
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.5e-14 82.0 153 35.3
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.5e-14 82.0 153 35.3
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 3.2e-13 79.7 66 63.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 9.4e-13 78.2 62 62.9
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.3e-11 73.6 67 49.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 3.4e-07 59.7 47 55.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.7e-06 57.4 75 45.3


User provided reference genes

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