Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.3e-223 779.6 464 100.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.4e-171 605.5 411 83.9
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 6.6e-143 511.5 412 72.6
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.1e-134 484.2 411 70.3
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 8.7e-111 404.8 399 63.7
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 9.7e-110 401.4 418 62.2
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 6.3e-109 398.7 418 62.0
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.6e-107 393.3 412 60.0
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.8e-103 380.6 404 62.1
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 6.1e-96 355.5 390 61.5
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 8.2e-93 345.1 402 59.5
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.1e-89 334.7 428 52.8
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 5.5e-89 332.4 420 53.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.7e-88 329.3 427 53.9
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 5.0e-82 309.3 415 51.8
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.2e-80 304.7 419 50.6
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.0e-79 301.6 409 50.6
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.7e-75 287.0 433 48.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 3.8e-74 283.1 435 46.7
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.6e-72 277.7 419 46.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.6e-72 277.7 440 44.8
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.8e-71 274.2 426 45.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.5e-70 271.2 428 45.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-69 268.1 445 43.8
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.2e-69 267.3 428 45.8
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 4.1e-68 263.1 424 43.4
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.0e-67 260.8 420 45.7
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.5e-67 260.0 429 43.1
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.5e-67 259.6 435 44.4
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 7.7e-67 258.8 449 42.3
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.3e-66 258.1 447 43.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.9e-66 256.9 446 42.4
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.9e-66 256.9 422 44.3
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 3.8e-66 256.5 425 43.5
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.6e-66 255.8 443 41.8
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.5e-65 254.6 425 44.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.5e-65 254.6 478 41.4
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.5e-65 254.6 415 45.3
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.3e-65 253.1 446 42.2
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.3e-65 253.1 421 43.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 7.3e-65 252.3 436 44.5
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 7.3e-65 252.3 412 44.2
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.3e-65 252.3 424 42.0
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.8e-64 250.4 447 42.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.8e-63 247.7 403 44.2
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.8e-63 247.7 428 41.4
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 6.8e-63 245.7 424 40.8
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.8e-63 245.7 462 41.3
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.8e-63 245.7 421 43.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.2e-62 245.0 445 41.6
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.0e-62 244.2 451 42.6
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 3.4e-62 243.4 428 42.1
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.4e-62 243.0 419 42.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.4e-62 243.0 460 41.5
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.7e-62 242.7 432 41.2
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 7.5e-62 242.3 436 41.3
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 7.5e-62 242.3 429 43.4
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 9.8e-62 241.9 421 42.5
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.2e-61 240.7 428 41.6
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 8.3e-61 238.8 422 42.7
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.4e-60 237.3 451 38.8
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 7.0e-60 235.7 441 40.4
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 9.2e-60 235.3 428 41.6
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.6e-59 234.6 435 40.7
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.0e-58 231.9 488 38.3
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.3e-58 231.5 441 40.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.3e-58 231.5 435 41.8
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.9e-58 229.9 429 42.0
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.6e-58 229.2 460 40.4
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.9e-57 227.6 428 40.4
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 3.3e-57 226.9 449 39.4
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.6e-57 226.1 431 41.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.3e-57 225.7 470 38.5
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-56 224.9 421 40.6
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.2e-56 224.9 414 40.6
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.6e-56 224.6 417 41.7
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 8.0e-56 222.2 420 41.7
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 2.3e-55 220.7 418 40.7
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 8.9e-55 218.8 389 41.4
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.6e-54 217.2 386 42.0
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.4e-54 216.9 420 40.0
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 3.4e-54 216.9 422 39.6
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 2.2e-53 214.2 420 39.3
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.9e-53 213.8 403 39.5
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 6.4e-53 212.6 512 37.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.1e-52 211.8 413 37.5
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.2e-52 210.3 402 40.3
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 3.2e-52 210.3 401 40.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.2e-51 208.4 413 37.3
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.6e-51 208.0 406 39.9
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.0e-51 207.6 519 38.0
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.6e-51 206.5 426 39.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.0e-50 205.3 386 39.9
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 3.0e-50 203.8 259 52.9
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.5e-49 198.7 404 38.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 4.7e-48 196.4 376 41.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 8.1e-48 195.7 345 44.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 3.1e-47 193.7 443 35.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 6.8e-47 192.6 311 45.7
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.0e-46 191.0 404 38.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.4e-44 184.9 444 34.0
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.1e-44 183.3 347 42.7
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 5.4e-44 183.0 387 37.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 3.5e-43 180.3 383 38.6
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.0e-42 178.7 407 36.1
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 5.1e-42 176.4 389 37.8
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.1e-41 175.3 389 37.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.2e-40 171.8 563 30.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 8.1e-40 169.1 303 41.6
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.2e-37 161.0 140 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.7e-35 154.1 465 32.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 4.4e-30 136.7 367 34.6
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.2e-27 128.6 119 57.1
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.7e-27 127.5 268 37.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 8.7e-26 122.5 298 37.2
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.3e-24 118.6 361 32.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.8e-24 117.5 398 29.1
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 4.8e-24 116.7 438 27.4
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.2e-24 116.3 141 52.5
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 6.2e-24 116.3 448 29.2
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 7.6e-22 109.4 271 36.2
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.9e-18 97.1 380 28.7
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.9e-15 86.3 94 46.8
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 2.0e-14 84.7 291 33.3
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.4e-14 84.0 102 45.1
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 9.3e-12 75.9 168 33.3
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 3.5e-11 73.9 273 30.8
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 7.9e-11 72.8 170 33.5
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.0e-10 72.4 184 34.8
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.0e-10 72.4 133 42.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 5.6e-09 66.6 353 26.3
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.6e-06 57.8 58 48.3
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.4e-06 57.4 58 50.0
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 1.0e-05 55.8 66 50.0


User provided reference genes

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