Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 1.9e-58 228.8 102 100.0
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 4.6e-57 224.2 102 95.1
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 4.1e-53 211.1 102 92.2
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 6.9e-53 210.3 102 90.2
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 2.0e-52 208.8 102 89.2
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 3.4e-52 208.0 102 90.2
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 1.7e-51 205.7 104 89.4
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 2.5e-50 201.8 102 88.2
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 4.2e-50 201.1 102 87.3
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 2.1e-49 198.7 102 87.3
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 2.1e-49 198.7 102 87.3
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 1.5e-47 192.6 109 79.8
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 6.3e-46 187.2 105 80.0
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 8.5e-43 176.8 112 70.5
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 1.1e-42 176.4 108 71.3
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 3.2e-42 174.9 106 70.8
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 5.5e-42 174.1 109 69.7
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 7.2e-42 173.7 110 70.0
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 7.2e-42 173.7 112 69.6
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 9.4e-42 173.3 105 72.4
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 9.4e-42 173.3 108 70.4
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 9.4e-42 173.3 108 70.4
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 1.2e-41 172.9 113 69.0
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 1.2e-41 172.9 106 69.8
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 1.6e-41 172.6 102 74.5
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 2.7e-41 171.8 113 66.4
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 2.7e-41 171.8 114 69.3
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 3.6e-41 171.4 110 70.0
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 6.1e-41 170.6 110 69.1
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 1.0e-40 169.9 112 67.9
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 1.4e-40 169.5 109 67.9
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 1.4e-40 169.5 98 74.5
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 1.4e-40 169.5 109 69.7
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 1.8e-40 169.1 110 69.1
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 5.2e-40 167.5 106 67.9
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 6.7e-40 167.2 110 66.4
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 6.7e-40 167.2 114 68.4
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 8.8e-40 166.8 107 69.2
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 8.8e-40 166.8 112 65.2
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 1.2e-39 166.4 117 64.1
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 1.2e-39 166.4 109 68.8
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 1.5e-39 166.0 110 66.4
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.5e-39 166.0 111 66.7
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 2.0e-39 165.6 110 69.1
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 4.4e-39 164.5 109 69.7
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 5.7e-39 164.1 111 65.8
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 5.7e-39 164.1 110 67.3
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 7.5e-39 163.7 112 66.1
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.3e-38 162.9 112 66.1
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 1.3e-38 162.9 105 69.5
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 1.7e-38 162.5 108 66.7
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 2.2e-38 162.2 105 68.6
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 3.7e-38 161.4 109 65.1
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 4.8e-38 161.0 102 70.6
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 6.3e-38 160.6 119 59.7
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 8.2e-38 160.2 118 59.3
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 1.1e-37 159.8 111 65.8
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 1.4e-37 159.5 111 64.0
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 2.4e-37 158.7 102 69.6
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 4.1e-37 157.9 107 63.6
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 4.1e-37 157.9 105 67.6
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 9.1e-37 156.8 115 60.0
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 9.1e-37 156.8 112 63.4
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.7e-36 155.2 111 59.5
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 4.5e-36 154.5 103 65.0
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 7.7e-36 153.7 119 58.0
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 7.7e-36 153.7 110 61.8
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 1.3e-35 152.9 112 60.7
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 1.3e-35 152.9 104 64.4
CsaV3_6G034440 Cucumis sativus L. HOM05D007582 ORTHO05D009645 1.7e-35 152.5 102 64.7
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 6.5e-35 150.6 115 60.9
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 8.5e-35 150.2 102 65.7
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 5.5e-34 147.5 110 61.8
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 5.5e-34 147.5 110 61.8
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 5.5e-34 147.5 114 58.8
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 1.6e-33 146.0 114 57.0
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 3.6e-33 144.8 110 59.1
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 8.0e-33 143.7 99 67.7
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 1.0e-32 143.3 107 62.6
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 6.8e-32 140.6 98 62.2
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 5.7e-31 137.5 120 52.5
Psat6g041680 Pisum sativum HOM05D007582 ORTHO05D009139 2.2e-30 135.6 96 61.5
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 7.0e-29 130.6 94 64.9
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.0e-28 129.0 105 54.3
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 5.9e-28 127.5 113 56.6
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 1.7e-27 125.9 101 50.5
Mapoly0085s0071 Marchantia polymorpha HOM05D007582 ORTHO05D009645 5.4e-21 104.4 119 39.5
Pp3c19_19360 Physcomitrium patens HOM05D007582 ORTHO05D009645 4.5e-20 101.3 120 41.7
Nitab4.5_0011334g0030 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.3e-19 99.8 73 57.5
Nn4g24512 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.2e-15 86.7 71 53.5
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.8e-13 79.3 102 45.1
AagrBONN_evm.TU.Sc2ySwM_362.1959 Anthoceros agrestis HOM05D007582 ORTHO05D009645 1.7e-11 72.8 67 49.3
AagrBONN_evm.TU.Sc2ySwM_362.2461 Anthoceros agrestis HOM05D007582 ORTHO05D009645 8.6e-11 70.5 66 45.5
Nn1g08790 Nelumbo nucifera HOM05D007582 ORTHO05D009645 4.3e-10 68.2 35 74.3
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 4.0e-08 61.6 42 66.7


User provided reference genes

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