Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 2715.3 1406 100.0
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 2465.3 1418 91.8
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 2329.7 1415 87.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 2209.9 1413 83.9
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2197.5 1422 82.8
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 2179.1 1419 82.5
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 2036.9 1420 78.5
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1971.8 1420 76.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1968.7 1418 76.3
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1967.2 1420 76.1
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1965.3 1424 76.5
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1952.6 1421 76.4
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1952.2 1421 76.4
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1813.5 1408 70.5
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1807.0 1275 78.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1521.9 1442 59.2
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1517.3 1466 58.4
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1515.7 1430 59.4
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1513.0 1474 57.9
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1511.5 1442 59.2
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1510.4 1460 58.9
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1495.7 1458 58.3
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1478.4 1474 56.7
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1478.0 1469 57.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1477.6 1468 56.9
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1474.5 1469 57.6
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1460.7 1463 57.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1454.5 1465 57.3
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1448.0 1448 56.4
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1444.9 1486 57.3
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1427.5 1461 56.3
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1412.9 1468 55.7
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1411.7 1465 55.5
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1406.7 1483 55.8
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1398.3 1460 55.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1397.9 1466 55.0
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1397.9 1479 54.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1397.1 1456 55.7
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1396.3 1411 56.5
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1394.0 1468 55.0
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1392.9 1485 54.5
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1392.5 1475 55.5
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1389.4 1477 54.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1389.0 1459 55.0
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1386.3 1435 56.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1384.0 1470 54.5
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1379.8 1479 54.2
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1372.8 1471 55.6
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1362.4 1477 54.0
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1351.7 1455 55.0
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1350.9 1538 52.5
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1347.4 1465 54.2
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1346.3 1462 53.8
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1345.9 1454 53.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1329.3 1483 52.3
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1321.2 1520 52.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1313.5 1437 55.2
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1306.2 1429 54.9
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1300.0 1457 53.2
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1298.9 1437 52.5
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1296.2 1462 54.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1289.2 1468 52.0
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1283.9 1469 52.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1277.7 1452 53.0
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1269.6 1481 52.0
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1268.4 1478 51.4
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1264.2 1460 51.4
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1263.8 1485 52.1
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1262.3 1477 51.7
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1261.1 1488 52.0
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1258.0 1326 55.2
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1255.7 1395 53.3
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1253.8 1359 54.4
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1251.9 1496 52.6
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1236.1 1455 51.1
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1236.1 1407 52.5
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1226.5 1221 58.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1213.4 1470 49.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1203.0 1475 49.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1199.1 1272 55.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1159.8 1267 53.3
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1159.4 1421 48.5
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1141.7 1406 49.1
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1141.3 1439 47.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1139.4 1408 48.9
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1113.2 1385 48.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1076.6 1318 49.8
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.1e-300 1035.8 1105 54.6
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 6.2e-293 1011.5 1075 55.0
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 1.8e-292 1010.0 1131 53.8
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 6.2e-285 984.9 1114 53.0
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.2e-285 984.9 1315 46.3
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 1.7e-282 976.9 1133 51.6
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 8.1e-277 958.0 916 58.5
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-260 904.4 1298 44.7
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 2.2e-234 817.0 1052 49.0
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.5e-230 804.3 1510 37.8
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.6e-230 803.5 1482 38.6
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 7.0e-228 795.4 1472 38.2
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 4.5e-211 739.6 1513 35.5
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.1e-196 691.8 993 45.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 7.0e-196 689.1 934 47.8
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 3.1e-183 647.1 820 48.2
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.1e-177 628.6 522 63.8
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 5.4e-156 556.6 1824 29.6
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 3.5e-155 553.9 1303 35.5
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 5.3e-143 513.5 425 65.4
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 3.9e-130 470.7 581 51.8
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.4e-127 462.2 883 38.7
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 2.7e-123 448.0 338 73.1
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 4.5e-118 430.6 612 45.1
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 6.1e-115 420.2 577 48.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.5e-113 415.6 441 55.3
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 3.7e-112 411.0 283 79.2
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.3e-112 410.2 438 53.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 6.8e-98 363.6 1281 29.7
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.1e-83 315.5 228 71.9
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-74 286.6 389 45.2
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 2.3e-66 258.8 555 36.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 5.8e-49 201.1 259 46.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 6.2e-35 154.5 159 56.0
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 3.9e-21 108.6 100 60.0
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 3.3e-20 105.5 82 64.6
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.1e-18 99.0 91 54.9
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.2e-17 97.1 65 69.2
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 8.5e-16 90.9 86 53.5
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 3.2e-15 89.0 66 60.6
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 2.1e-14 86.3 86 58.1
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.0e-13 84.0 105 49.5
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.5e-12 80.1 70 60.0
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 7.4e-12 77.8 87 42.5
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 7.7e-09 67.8 97 44.3
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.9e-07 63.2 52 55.8
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 3.6e-06 58.9 48 60.4


User provided reference genes

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