Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.2e-75 285.4 135 100.0
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.0e-55 219.2 117 88.0
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 8.9e-48 193.7 117 76.1
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 4.9e-46 188.0 117 76.1
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.7e-43 179.5 113 73.5
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.3e-43 179.1 120 75.8
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.3e-43 179.1 119 73.9
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 3.0e-43 178.7 120 70.8
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 6.6e-43 177.6 119 74.8
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.5e-42 175.6 117 70.9
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 4.7e-41 171.4 111 73.9
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 1.8e-40 169.5 102 77.5
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 1.8e-40 169.5 102 77.5
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 2.3e-40 169.1 117 70.9
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 3.1e-40 168.7 116 69.8
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 3.1e-40 168.7 121 67.8
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 4.0e-40 168.3 117 69.2
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 4.4e-39 164.9 103 76.7
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 9.9e-39 163.7 118 69.5
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 9.9e-39 163.7 104 76.0
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 2.9e-38 162.2 129 65.1
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 1.4e-37 159.8 129 62.0
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 6.0e-36 154.5 107 71.0
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.0e-35 152.1 101 68.3
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 3.4e-31 138.7 104 62.5
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 8.4e-30 134.0 122 53.3
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 1.4e-29 133.3 104 59.6
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 1.4e-29 133.3 91 61.5
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 5.4e-29 131.3 94 67.0
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.2e-28 130.2 95 61.1
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.2e-28 130.2 95 61.1
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 2.1e-28 129.4 90 62.2
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 6.0e-28 127.9 70 80.0
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 6.0e-28 127.9 105 59.0
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 7.8e-28 127.5 80 68.8
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.8e-28 127.5 106 57.5
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 1.0e-27 127.1 78 69.2
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 1.3e-27 126.7 101 62.4
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 1.3e-27 126.7 107 57.0
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 3.0e-27 125.6 88 65.9
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 3.0e-27 125.6 90 58.9
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 3.0e-27 125.6 99 61.6
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 3.0e-27 125.6 77 70.1
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 3.9e-27 125.2 90 58.9
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 5.1e-27 124.8 108 53.7
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 6.6e-27 124.4 81 67.9
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 8.7e-27 124.0 93 60.2
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 8.7e-27 124.0 77 68.8
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 8.7e-27 124.0 77 68.8
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 1.1e-26 123.6 81 66.7
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 1.5e-26 123.2 109 53.2
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 1.9e-26 122.9 77 68.8
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 1.9e-26 122.9 93 59.1
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.9e-26 122.9 77 68.8
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 2.5e-26 122.5 82 63.4
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 4.3e-26 121.7 81 64.2
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 5.6e-26 121.3 110 54.5
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 5.6e-26 121.3 103 54.4
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 9.6e-26 120.6 67 76.1
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 1.3e-25 120.2 119 51.3
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 1.3e-25 120.2 77 66.2
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 1.6e-25 119.8 72 72.2
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.6e-25 119.8 80 65.0
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 1.6e-25 119.8 90 58.9
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 1.6e-25 119.8 99 52.5
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 1.6e-25 119.8 76 67.1
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 2.8e-25 119.0 70 74.3
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 2.8e-25 119.0 89 59.6
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 3.6e-25 118.6 94 54.3
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 4.8e-25 118.2 91 54.9
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 6.2e-25 117.9 78 65.4
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 6.2e-25 117.9 105 55.2
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 6.2e-25 117.9 102 49.0
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 8.1e-25 117.5 70 72.9
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 8.1e-25 117.5 93 57.0
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 1.1e-24 117.1 91 56.0
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 1.4e-24 116.7 77 67.5
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 1.4e-24 116.7 102 51.0
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 1.4e-24 116.7 92 53.3
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 1.8e-24 116.3 77 63.6
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 2.4e-24 115.9 105 56.2
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 2.4e-24 115.9 85 57.6
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.4e-24 115.9 85 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 3.1e-24 115.5 78 65.4
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-24 115.5 85 57.6
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.1e-24 115.5 95 55.8
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 4.0e-24 115.2 97 51.5
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 4.0e-24 115.2 100 50.0
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 5.3e-24 114.8 106 54.7
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 6.9e-24 114.4 77 66.2
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 6.9e-24 114.4 77 64.9
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 6.9e-24 114.4 77 63.6
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 9.0e-24 114.0 114 49.1
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 1.2e-23 113.6 122 46.7
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.2e-23 113.6 79 64.6
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 1.5e-23 113.2 77 62.3
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 2.0e-23 112.8 101 53.5
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 2.0e-23 112.8 103 48.5
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.0e-23 112.8 95 53.7
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 2.6e-23 112.5 79 63.3
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 3.4e-23 112.1 122 49.2
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 5.8e-23 111.3 107 44.9
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.6e-23 110.9 77 61.0
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.3e-22 110.2 102 50.0
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.7e-22 109.8 103 47.6
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.9e-22 109.0 88 59.1
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.8e-22 108.6 103 48.5
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.8e-22 108.6 103 48.5
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 4.9e-22 108.2 75 65.3
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 4.9e-22 108.2 68 66.2
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 4.9e-22 108.2 103 47.6
CARHR259050 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.1e-21 107.1 83 66.3
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.1e-21 107.1 67 70.1
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 1.9e-21 106.3 84 61.9
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.2e-21 105.5 88 56.8
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 3.2e-21 105.5 67 64.2
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 7.1e-21 104.4 75 58.7
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 9.3e-21 104.0 92 50.0
Mapoly0104s0006 Marchantia polymorpha HOM05D003510 ORTHO05D004144 1.2e-20 103.6 124 45.2
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.2e-20 103.6 102 52.9
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 1.6e-20 103.2 69 65.2
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 1.6e-20 103.2 128 41.4
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.6e-20 103.2 67 71.6
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 2.1e-20 102.8 100 50.0
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 2.1e-20 102.8 72 61.1
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 2.1e-20 102.8 72 61.1
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 2.7e-20 102.4 66 66.7
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 3.5e-20 102.1 68 67.6
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 1.0e-19 100.5 82 57.3
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 1.3e-19 100.1 66 62.1
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.8e-19 99.8 68 61.8
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 3.9e-19 98.6 104 48.1
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 5.1e-19 98.2 77 55.8
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 5.1e-19 98.2 77 55.8
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 1.1e-18 97.1 71 52.1
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 1.1e-18 97.1 71 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 1.5e-18 96.7 138 38.4
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 1.9e-18 96.3 71 52.1
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 1.9e-18 96.3 61 65.6
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.5e-18 95.9 70 61.4
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.5e-18 95.9 70 61.4
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.5e-18 95.9 70 61.4
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.5e-18 95.9 70 61.4
ECA234G3856 Erigeron canadensis HOM05D003510 ORTHO05D000001 2.5e-18 95.9 98 42.9
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 5.6e-18 94.7 69 66.7
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 7.4e-18 94.4 70 60.0
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 9.6e-18 94.0 83 50.6
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 1.3e-17 93.6 71 62.0
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 6.2e-17 91.3 74 55.4
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 2.4e-16 89.4 88 53.4
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-16 89.0 68 50.0
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-16 89.0 68 50.0
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-16 89.0 70 52.9
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-16 89.0 70 52.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.3e-16 88.2 78 50.0
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 7.6e-15 84.3 69 50.7
Medtr5g056300 Medicago truncatula HOM05D003510 ORTHO05D004144 2.2e-14 82.8 60 65.0
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 3.8e-14 82.0 68 54.4
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 4.9e-14 81.6 70 45.7
SalBow8G4707 Salvia bowleyana HOM05D003510 ORTHO05D004144 4.9e-14 81.6 77 46.8
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 8.4e-14 80.9 75 46.7
MSTRG.13540 Avicennia marina HOM05D003510 ORTHO05D004144 2.4e-13 79.3 74 54.1
Cre04.g213761 Chlamydomonas reinhardtii HOM05D003510 ORTHO05D004144 2.4e-13 79.3 69 53.6
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.2e-13 79.0 98 41.8
Dinv21067 Davidia involucrata HOM05D003510 ORTHO05D004144 4.2e-13 78.6 70 52.9
Migut.M00674 Erythranthe guttata HOM05D003510 ORTHO05D004144 9.3e-13 77.4 78 43.6
SGA_v2.0_scaffold211G42096 Striga asiatica HOM05D003510 ORTHO05D004144 9.3e-13 77.4 75 44.0
Haze_00608 Corylus avellana HOM05D003510 ORTHO05D004144 1.2e-12 77.0 89 48.3
Gohir.D04G137825 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.2e-12 77.0 57 59.6
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 1.6e-12 76.6 67 49.3
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 6.0e-12 74.7 68 48.5
BcaC04g22124 Brassica carinata HOM05D003510 ORTHO05D004144 7.9e-12 74.3 56 64.3
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.0e-11 73.9 79 48.1
Gorai.012G122400 Gossypium raimondii HOM05D003510 ORTHO05D004144 3.9e-11 72.0 57 59.6
Os02g0659700 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 1.1e-10 70.5 67 46.3
BolC9t55224H Brassica oleracea HOM05D003510 ORTHO05D004144 1.5e-10 70.1 70 54.3
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 1.5e-10 70.1 67 41.8
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 8.2e-09 64.3 71 39.4
Zm00001eb249640 Zea mays HOM05D003510 ORTHO05D004144 2.6e-07 59.3 59 45.8
TPR.G38336 Trifolium pratense HOM05D003510 ORTHO05D004144 4.5e-07 58.5 45 53.3


User provided reference genes

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