Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 2001.9 1006 100.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1910.2 1015 95.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1879.8 1008 93.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1862.8 1008 93.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1857.0 1008 92.1
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1852.0 1008 92.5
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1830.8 1009 91.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1820.4 1008 91.4
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1820.1 1008 91.4
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1818.1 1008 91.3
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1813.1 1008 91.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1812.0 1008 91.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1701.8 1019 85.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1691.0 1011 85.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1494.6 1014 74.6
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1493.0 1012 74.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1016 75.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1015 75.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1016 74.1
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1010 75.2
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1017 73.8
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1470.7 1010 74.5
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1468.4 1029 72.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1466.4 1030 72.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1466.1 1010 73.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1458.7 1013 73.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1455.7 1014 74.1
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1020 72.0
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1449.5 1025 72.3
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1449.5 1012 72.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1442.2 1011 72.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1441.0 1013 73.1
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1020 71.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1011 72.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 1017 71.8
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1020 71.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1435.2 1016 71.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1426.4 1036 70.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1036 70.6
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1423.7 1007 73.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1016 71.9
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1047 69.9
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1020 72.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1013 71.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1008 71.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1412.9 1029 70.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1412.1 1021 72.2
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 1020 71.7
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1406.7 1020 70.9
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1036 69.2
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 1018 71.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 975 73.6
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 1043 68.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 1013 70.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1018 71.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1057 67.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1392.9 1015 70.4
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1022 70.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1017 70.2
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1379.4 1011 69.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1377.5 1032 69.6
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1375.5 1007 69.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1370.5 1013 69.2
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1367.4 1002 69.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1365.1 1010 68.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1364.0 1007 68.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1360.5 1009 68.4
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 1013 69.4
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 1002 69.0
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 1040 67.6
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1018 68.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1349.0 977 71.8
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1348.6 1092 65.8
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1016 68.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1333.2 983 68.9
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1325.8 1011 67.2
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 934 72.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1323.5 1025 66.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1317.8 978 69.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1313.5 1012 67.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1306.6 1020 65.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1301.6 1009 68.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 1020 64.7
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1297.7 1022 64.7
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1295.4 1021 65.2
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1294.3 1001 66.0
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1277.3 1007 66.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 983 67.5
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 1010 65.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 968 68.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1268.8 1116 61.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1268.4 1007 66.3
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 984 66.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1007 65.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1258.8 1014 65.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1258.0 1034 63.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1251.9 1019 63.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 1009 64.6
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1235.3 1047 62.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1233.4 1033 62.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 948 66.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1223.0 1011 63.7
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1149 56.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1208.4 1002 63.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 1044 60.2
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 1182 55.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 1043 61.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1199.9 919 68.3
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1191.8 1006 61.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1172.9 1009 59.8
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1171.8 1011 61.8
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 1017 61.2
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1163.7 861 69.5
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1145.2 1011 58.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1119.8 1016 59.6
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1112.4 987 61.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1099.3 897 64.5
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1083.6 862 66.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1080.9 934 60.1
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 9.2e-307 1057.0 815 69.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.1e-286 988.8 945 58.4
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.0e-273 945.7 867 58.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.5e-264 916.8 1039 48.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.3e-264 915.2 782 63.3
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 7.1e-259 897.9 1045 48.7
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.9e-249 865.5 981 48.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-244 849.4 632 71.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-238 830.5 633 69.2
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 4.5e-229 798.9 648 67.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-228 797.7 1015 45.3
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-225 787.7 1016 44.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 5.5e-219 765.4 621 65.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.8e-209 733.8 1223 40.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.2e-207 726.9 873 44.0
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 8.4e-175 618.6 392 77.3
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.6e-170 603.2 360 79.4
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.3e-154 551.6 390 71.8
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-148 529.3 408 69.1
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-146 523.1 421 67.7
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.1e-142 509.2 560 51.4
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-141 508.1 533 52.7
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.8e-98 364.4 238 76.5
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 9.1e-97 359.4 257 72.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.2e-96 359.0 205 79.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-95 355.9 280 67.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-83 314.3 241 67.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.9e-79 300.8 839 28.6
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.8e-76 290.0 223 70.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 6.4e-74 283.5 162 80.2
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.6e-70 270.4 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-54 219.2 226 53.1
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.2e-52 210.7 235 55.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 5.4e-49 200.7 229 55.5
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.3e-45 189.5 482 31.3
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-45 189.1 114 71.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 6.2e-45 187.2 148 70.9
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.5e-40 171.4 90 82.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-37 162.9 150 55.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.8e-36 159.1 117 71.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 6.9e-36 157.1 202 49.0
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.3e-30 138.3 79 77.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 3.4e-27 128.3 99 67.7
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 3.4e-27 128.3 99 67.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.4e-27 128.3 122 60.7
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-26 126.3 81 79.0
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.7e-26 125.9 77 70.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.7e-23 114.0 120 58.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.5e-22 112.1 80 66.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-21 108.2 96 54.2
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 5.5e-17 94.4 81 65.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.0e-15 88.6 58 77.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 2.8e-13 82.0 71 54.9
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 2.0e-11 75.9 70 65.7
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.5e-10 70.9 48 68.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.7e-08 65.5 65 49.2


User provided reference genes

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