Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 2.6e-127 458.8 238 100.0
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 4.8e-121 438.0 239 95.4
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 1.5e-114 416.4 236 89.8
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 2.2e-113 412.5 236 88.1
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 5.3e-112 407.9 236 88.1
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 1.7e-110 402.9 236 86.0
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 1.7e-110 402.9 236 86.0
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 1.9e-109 399.4 236 85.6
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 2.1e-108 396.0 237 86.9
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 2.7e-108 395.6 236 84.7
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 1.7e-105 386.3 236 82.2
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 2.0e-103 379.4 227 83.7
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 6.3e-97 357.8 236 76.7
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 6.5e-86 321.2 235 68.9
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 2.5e-85 319.3 235 68.9
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.2e-84 317.0 235 68.9
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 1.6e-84 316.6 235 68.5
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 5.7e-82 308.1 233 65.2
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 1.3e-81 307.0 236 64.8
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 1.7e-81 306.6 234 66.2
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 3.7e-81 305.4 236 64.4
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 6.3e-81 304.7 236 64.0
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 3.1e-80 302.4 224 68.3
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.2e-79 300.4 236 64.4
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 2.0e-79 299.7 238 63.9
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 3.5e-79 298.9 236 64.0
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 4.5e-79 298.5 237 63.3
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 3.8e-78 295.4 236 64.0
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 5.0e-78 295.0 236 61.4
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 6.5e-78 294.7 236 63.1
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 1.5e-77 293.5 211 71.6
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 2.5e-77 292.7 234 63.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 4.2e-77 292.0 238 60.9
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 4.2e-77 292.0 230 64.8
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 4.2e-77 292.0 236 60.2
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 5.5e-77 291.6 238 63.0
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 7.2e-77 291.2 239 62.8
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 9.4e-77 290.8 226 63.3
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 1.2e-76 290.4 234 62.4
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 2.1e-76 289.7 232 64.2
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 2.7e-76 289.3 239 61.9
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 2.7e-76 289.3 252 59.1
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 3.6e-76 288.9 237 60.3
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 3.6e-76 288.9 230 63.5
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 4.7e-76 288.5 233 61.4
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 6.1e-76 288.1 234 62.0
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 6.1e-76 288.1 234 61.5
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 3.0e-75 285.8 236 60.6
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.0e-75 285.8 234 61.1
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 6.8e-75 284.6 232 62.1
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 1.2e-74 283.9 235 60.9
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 1.5e-74 283.5 234 61.5
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 2.0e-74 283.1 234 60.3
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.6e-74 282.7 234 60.3
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 3.4e-74 282.3 236 60.6
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 3.4e-74 282.3 213 65.7
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.7e-74 281.6 234 59.8
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 7.5e-74 281.2 224 62.9
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 7.5e-74 281.2 234 59.8
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 2.2e-73 279.6 234 60.7
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 3.7e-73 278.9 232 59.9
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 3.7e-73 278.9 224 64.3
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 8.3e-73 277.7 219 63.5
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 8.3e-73 277.7 227 61.7
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 1.4e-72 276.9 236 59.3
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 1.8e-72 276.6 227 60.8
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 3.1e-72 275.8 226 61.5
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 3.1e-72 275.8 237 57.8
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 7.0e-72 274.6 225 60.9
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 3.5e-71 272.3 236 57.2
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 4.5e-71 271.9 226 59.7
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 7.7e-71 271.2 221 60.6
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 1.7e-70 270.0 234 61.1
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 2.3e-70 269.6 235 59.6
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 3.8e-70 268.9 229 58.5
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 3.8e-70 268.9 236 56.8
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 3.8e-70 268.9 229 58.5
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.9e-69 266.5 232 59.5
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 2.5e-69 266.2 231 59.3
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 4.2e-69 265.4 236 57.6
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 9.5e-69 264.2 221 60.2
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.2e-68 263.8 231 57.1
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 2.1e-68 263.1 229 56.8
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 1.4e-67 260.4 229 60.7
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 1.8e-67 260.0 238 58.8
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 4.0e-67 258.8 227 58.1
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 6.8e-67 258.1 221 59.7
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 5.7e-66 255.0 235 55.7
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 9.8e-66 254.2 219 57.1
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 2.8e-65 252.7 236 54.2
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 3.7e-65 252.3 213 57.3
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.2e-63 247.3 224 58.0
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 1.2e-63 247.3 255 52.5
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 3.9e-54 215.7 224 50.9
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 1.5e-53 213.8 231 48.1
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 8.3e-49 198.0 158 60.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 1.3e-46 190.7 186 55.4
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 1.9e-45 186.8 152 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 5.6e-45 185.3 227 44.5
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 1.4e-43 180.6 212 43.4
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 4.4e-42 175.6 158 56.3
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.7e-41 173.7 143 56.6
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 1.4e-40 170.6 227 39.6
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 2.7e-39 166.4 237 42.6
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 6.2e-36 155.2 136 53.7
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 2.2e-33 146.7 219 37.0
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 2.4e-32 143.3 218 34.9
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 3.2e-32 142.9 217 35.0
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 3.3e-29 132.9 119 54.6
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 1.7e-25 120.6 164 41.5
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.8e-25 119.4 102 59.8
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 3.0e-22 109.8 109 55.0
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.5e-21 107.5 72 66.7
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 7.6e-18 95.1 211 30.8
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 1.7e-09 67.4 70 54.3
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 1.7e-09 67.4 70 54.3
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 3.0e-06 56.6 43 58.1


User provided reference genes

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