Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.1e-261 905.2 463 100.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.5e-243 845.1 463 93.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.0e-229 797.3 465 88.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 6.7e-220 767.3 464 85.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.2e-218 762.3 464 85.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.2e-214 748.0 464 84.5
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.8e-199 698.4 465 80.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-197 692.2 465 79.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.7e-197 692.2 465 79.1
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.3e-196 689.1 463 78.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.8e-193 679.5 466 75.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 9.1e-193 677.2 466 77.9
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.5e-163 580.1 471 65.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.8e-125 453.0 480 54.6
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 4.8e-125 452.2 476 55.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.4e-124 449.9 476 55.7
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.6e-123 446.4 476 55.3
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.1e-121 441.0 464 57.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.9e-121 440.3 465 57.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.9e-121 440.3 468 54.1
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.7e-120 436.4 477 52.8
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 6.0e-120 435.3 488 52.7
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.3e-119 433.3 482 52.9
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 4.0e-116 422.5 501 51.5
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 6.9e-116 421.8 478 52.1
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.6e-115 419.9 472 49.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.2e-114 416.8 478 50.6
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.8e-114 416.0 477 50.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.4e-113 414.1 464 51.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.7e-112 409.8 477 49.5
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.0e-111 407.9 480 51.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-111 407.5 469 49.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.3e-111 407.5 507 47.7
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.3e-111 406.8 524 48.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 5.1e-111 405.6 468 48.9
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.3e-109 401.0 497 50.1
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.6e-109 400.6 498 49.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 6.3e-109 398.7 464 52.4
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 6.3e-109 398.7 535 47.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.4e-108 397.5 490 48.2
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.1e-108 396.0 484 50.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 9.0e-108 394.8 451 50.1
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.5e-107 392.5 504 48.2
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.0e-106 391.3 482 47.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.9e-106 389.8 484 47.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.9e-106 389.8 491 47.0
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 5.0e-106 389.0 485 47.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 6.5e-106 388.7 500 48.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.5e-106 388.7 480 48.3
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 8.5e-106 388.3 502 48.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 8.5e-106 388.3 487 49.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.5e-106 388.3 491 48.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 8.5e-106 388.3 475 47.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 8.5e-106 388.3 483 47.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.5e-105 386.7 490 46.7
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.2e-105 386.3 485 47.0
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.2e-105 386.0 514 46.7
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.3e-105 384.8 490 46.7
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.6e-104 382.5 468 48.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.0e-103 381.3 480 48.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.7e-103 378.6 520 46.2
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.7e-103 378.6 520 46.2
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.7e-103 378.6 460 47.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 8.7e-103 378.3 475 47.8
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.1e-102 377.9 475 47.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.5e-102 377.5 468 46.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 7.4e-102 375.2 486 47.7
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 9.7e-102 374.8 472 47.7
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.3e-101 372.1 477 46.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.2e-101 371.7 477 45.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-100 370.5 477 45.7
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.1e-100 369.8 489 45.8
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.1e-100 369.4 480 48.1
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.1e-100 369.4 488 47.5
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 9.0e-100 368.2 444 47.7
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.5e-99 367.5 477 46.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.0e-99 367.1 525 44.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.4e-99 366.3 483 46.8
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.2e-98 363.6 476 48.1
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 5.0e-98 362.5 481 45.7
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 6.5e-98 362.1 511 43.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 6.5e-98 362.1 469 47.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.6e-96 357.5 507 45.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.6e-96 355.9 510 43.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.9e-96 355.1 473 46.7
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.9e-95 352.8 488 45.9
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-94 351.3 396 55.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.8e-93 346.7 401 48.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.8e-93 346.7 401 48.9
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 8.2e-93 345.1 400 49.0
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.1e-92 344.7 481 45.7
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 6.9e-92 342.0 341 55.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.0e-91 340.5 452 46.0
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.5e-90 335.5 451 46.1
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.9e-89 334.0 496 43.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 7.2e-89 332.0 465 43.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 9.4e-89 331.6 405 47.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.6e-88 329.7 404 46.8
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.1e-86 324.7 475 42.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-85 321.2 372 50.8
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.3e-84 315.8 435 47.1
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.6e-83 313.5 486 42.6
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 4.5e-83 312.8 557 39.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.2e-80 304.7 472 42.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.0e-79 301.6 466 42.5
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.5e-78 297.7 469 43.1
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.3e-77 294.7 475 41.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-75 288.1 473 42.1
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.0e-75 287.3 472 40.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.0e-74 285.0 399 44.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.5e-73 280.4 484 40.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 8.0e-72 275.4 369 47.4
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.7e-69 267.7 442 40.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.6e-67 261.2 332 46.1
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.2e-65 253.1 401 40.4
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 4.9e-61 239.6 466 37.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.4e-60 237.3 475 35.6
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 5.9e-59 232.6 495 35.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 7.8e-59 232.3 413 37.8
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.0e-58 231.9 492 36.4
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 3.6e-56 223.4 350 39.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.2e-52 210.3 456 35.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.3e-50 204.1 733 27.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.1e-40 169.1 213 47.4
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.8e-39 167.9 667 27.0
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.3e-39 167.5 479 31.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.2e-39 166.4 235 44.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.4e-36 158.3 205 47.3
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 6.0e-35 152.9 380 31.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-34 151.8 207 46.4
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.7e-34 151.4 634 27.8
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.1e-33 148.7 594 26.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.2e-23 113.2 211 38.4
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.4e-22 110.5 215 35.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 9.9e-22 109.0 213 34.7
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 9.9e-22 109.0 532 26.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 9.3e-20 102.4 198 37.4
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 4.6e-19 100.1 599 24.0
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.6e-19 100.1 199 36.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.3e-18 98.6 169 33.1
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.1e-18 96.7 200 33.0
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 5.1e-18 96.7 138 39.1
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 1.9e-17 94.7 321 27.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.5e-17 94.4 202 34.2
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.5e-17 94.4 154 45.5
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 5.6e-17 93.2 206 34.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.3e-16 92.0 217 31.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 8.1e-16 89.4 84 54.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.8e-15 88.2 116 43.1
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 5.8e-14 83.2 69 52.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 3.5e-11 73.9 109 48.6
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 7.9e-11 72.8 107 48.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.8e-10 71.6 210 28.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.0e-10 70.9 92 47.8
Aa31LG6G7990 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.9e-09 68.2 60 65.0
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 4.8e-08 63.5 289 26.3
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 6.2e-08 63.2 182 33.5
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.8e-07 61.6 192 30.2
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.0e-07 60.5 67 44.8
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 4.0e-07 60.5 47 55.3
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 2.0e-06 58.2 93 41.9
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 9.9e-06 55.8 140 30.0
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 9.9e-06 55.8 131 31.3


User provided reference genes

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