Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 1.4e-38 162.5 85 100.0
AL1G47210 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 2.1e-34 148.7 85 94.1
Carub.0001s3124 Capsella rubella HOM05D008703 ORTHO05D006961 6.4e-28 127.1 86 82.6
CARHR032250 Cardamine hirsuta HOM05D008703 ORTHO05D006961 6.4e-28 127.1 85 82.4
Sp1g28080 Schrenkiella parvula HOM05D008703 ORTHO05D006961 6.9e-22 107.1 86 76.7
Aa31LG6G7520 Aethionema arabicum HOM05D008703 ORTHO05D006961 2.2e-20 102.1 86 68.6
Thhalv10009742m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 2.5e-19 98.6 88 68.2
A09p33470 Brassica napus HOM05D008703 ORTHO05D006961 1.6e-18 95.9 86 69.8
BraA09t38889Z Brassica rapa HOM05D008703 ORTHO05D006961 1.6e-18 95.9 86 69.8
A05p24420 Brassica napus HOM05D008703 ORTHO05D006961 2.5e-16 88.6 85 65.9
BolC5t32543H Brassica oleracea HOM05D008703 ORTHO05D006961 2.5e-16 88.6 85 65.9
BraA05t21333Z Brassica rapa HOM05D008703 ORTHO05D006961 2.5e-16 88.6 85 65.9
BcaC05g27316 Brassica carinata HOM05D008703 ORTHO05D006961 3.3e-16 88.2 86 65.1
BolC5t31969H Brassica oleracea HOM05D008703 ORTHO05D006961 3.3e-16 88.2 86 65.1
BcaC05g27814 Brassica carinata HOM05D008703 ORTHO05D006961 1.3e-15 86.3 85 64.7
C05p38160 Brassica napus HOM05D008703 ORTHO05D006961 1.3e-15 86.3 85 64.7
CARHR032240 Cardamine hirsuta HOM05D008703 ORTHO05D006961 5.3e-14 80.9 85 57.6
Thhalv10009230m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 2.0e-13 79.0 88 56.8
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 3.4e-13 78.2 86 55.8
AL1G47200 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 4.5e-13 77.8 85 51.8
A09p33480 Brassica napus HOM05D008703 ORTHO05D006961 1.0e-12 76.6 85 52.9
BraA09t38890Z Brassica rapa HOM05D008703 ORTHO05D006961 1.0e-12 76.6 85 52.9
Aa31LG6G7510 Aethionema arabicum HOM05D008703 ORTHO05D006961 1.3e-12 76.3 86 57.0
C05p32370 Brassica napus HOM05D008703 ORTHO05D006961 1.3e-12 76.3 85 51.8
BolC5t31968H Brassica oleracea HOM05D008703 ORTHO05D006961 1.3e-12 76.3 85 51.8
BcaC05g27315 Brassica carinata HOM05D008703 ORTHO05D006961 2.9e-12 75.1 85 51.8
AT1G32920 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 3.8e-12 74.7 85 50.6
Thhalv10009241m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 3.8e-12 74.7 85 50.6
BcaC07g37617 Brassica carinata HOM05D008703 ORTHO05D006961 6.5e-12 73.9 86 51.2
BolC8t47976H Brassica oleracea HOM05D008703 ORTHO05D006961 6.5e-12 73.9 86 51.2
A08p09220 Brassica napus HOM05D008703 ORTHO05D006961 8.5e-12 73.6 86 51.2
BraA08t32922Z Brassica rapa HOM05D008703 ORTHO05D006961 8.5e-12 73.6 86 51.2
BcaC07g37618 Brassica carinata HOM05D008703 ORTHO05D006961 5.5e-11 70.9 86 50.0
BcaB04g17983 Brassica carinata HOM05D008703 ORTHO05D006961 9.4e-11 70.1 87 54.0
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.4e-09 66.2 82 42.7
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.4e-09 66.2 82 42.7
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 3.0e-09 65.1 82 42.7
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 3.0e-09 65.1 82 42.7
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 3.9e-09 64.7 93 46.2
ClCG01G001400 Citrullus lanatus HOM05D018156 ORTHO05D006961 1.1e-08 63.2 84 51.2
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 1.5e-08 62.8 89 42.7
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 4.3e-08 61.2 87 39.1
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 4.3e-08 61.2 87 39.1
Carub.0001s3123 Capsella rubella HOM05D008703 ORTHO05D006961 7.4e-08 60.5 93 43.0
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 7.4e-08 60.5 87 42.5
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 9.7e-08 60.1 82 46.3
CARHR256120 Cardamine hirsuta HOM05D008703 ORTHO05D006961 1.3e-07 59.7 84 45.2
AL6G44550 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 2.8e-07 58.5 85 49.4
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.8e-07 58.5 89 42.7
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.8e-07 58.5 89 42.7
Thhalv10029203m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 3.7e-07 58.2 85 47.1
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 3.7e-07 58.2 86 46.5
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 3.7e-07 58.2 95 41.1
RcHm_v2.0_Chr7g0187591 Rosa chinensis HOM05D008613 ORTHO05D006961 3.7e-07 58.2 83 42.2
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 3.7e-07 58.2 86 38.4
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 6.3e-07 57.4 86 44.2
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 6.3e-07 57.4 86 44.2
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 6.3e-07 57.4 82 43.9
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 6.3e-07 57.4 83 41.0
Cfa011897 Carpinus fangiana HOM05D019613 ORTHO05D006961 8.2e-07 57.0 84 44.0
Sp6g06920 Schrenkiella parvula HOM05D008703 ORTHO05D006961 8.2e-07 57.0 82 42.7
Sed0012511 Sechium edule HOM05D018156 ORTHO05D006961 8.2e-07 57.0 83 42.2
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.1e-06 56.6 89 41.6
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.1e-06 56.6 89 41.6
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 1.4e-06 56.2 83 43.4
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 1.4e-06 56.2 89 43.8
Sed0004803 Sechium edule HOM05D018156 ORTHO05D006961 1.4e-06 56.2 83 41.0
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-06 55.8 89 40.4
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-06 55.8 89 41.6
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-06 55.8 90 38.9
Aa31LG9G11460 Aethionema arabicum HOM05D008703 ORTHO05D006961 3.1e-06 55.1 85 43.5
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 3.1e-06 55.1 86 44.2
Haze_09201 Corylus avellana HOM05D019613 ORTHO05D006961 3.1e-06 55.1 86 44.2
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.1e-06 55.1 102 43.1
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 4.1e-06 54.7 84 44.0
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 5.3e-06 54.3 90 44.4
EL10Ac3g05184 Beta vulgaris HOM05D008613 ORTHO05D006961 5.3e-06 54.3 96 41.7
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 6.9e-06 53.9 83 41.0
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 6.9e-06 53.9 91 40.7
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 6.9e-06 53.9 85 42.4
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 9.1e-06 53.5 89 36.0
Sp6g06940 Schrenkiella parvula HOM05D008703 ORTHO05D006961 9.1e-06 53.5 80 46.2


User provided reference genes

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