Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.3e-55 219.5 116 100.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.8e-55 218.0 116 99.1
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.8e-55 218.0 116 99.1
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.8e-55 218.0 116 99.1
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 8.4e-55 216.9 116 97.4
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 8.4e-55 216.9 116 99.1
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.4e-54 216.1 116 98.3
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.4e-54 216.1 116 98.3
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.9e-54 215.7 116 97.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.9e-54 215.7 116 97.4
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 3.2e-54 214.9 116 96.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 3.2e-54 214.9 116 97.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 3.2e-54 214.9 116 96.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 3.2e-54 214.9 116 97.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.5e-53 211.5 116 95.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.6e-53 211.1 116 95.7
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.0e-52 209.9 116 93.1
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.3e-52 209.5 116 94.0
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.8e-52 209.1 116 94.0
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.3e-52 208.8 116 93.1
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 5.1e-52 207.6 116 92.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 92.2
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 93.1
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.5e-51 206.1 115 93.0
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 92.9
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 3.3e-51 204.9 116 91.4
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 92.2
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 91.4
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 91.4
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 89.7
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 89.7
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 94.7
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 9.7e-51 203.4 116 90.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.6e-50 202.6 116 90.5
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 92.0
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 91.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 92.0
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 90.5
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 88.8
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 116 87.1
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.7e-50 201.4 116 87.9
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 6.3e-50 200.7 118 91.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.3e-50 200.7 113 91.2
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 6.3e-50 200.7 116 88.8
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 8.2e-50 200.3 113 91.2
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 8.2e-50 200.3 116 88.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.1e-49 199.9 116 90.5
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.8e-49 199.1 110 91.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 89.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 87.9
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 90.3
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.4e-49 198.7 115 89.6
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 88.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 92.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 91.2
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 90.3
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 91.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 89.7
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 89.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 89.4
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 89.4
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 88.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 88.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 91.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 91.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 6.9e-49 197.2 116 87.9
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 90.3
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 90.3
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 90.3
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 9.0e-49 196.8 113 89.4
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 9.0e-49 196.8 113 89.4
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 88.5
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 88.5
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 88.5
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 88.5
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.6e-48 195.3 116 87.1
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.6e-48 195.3 116 87.1
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.4e-48 194.9 113 91.2
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.4e-48 194.9 116 86.2
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.4e-48 194.9 116 86.2
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 86.2
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 89.4
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 5.9e-48 194.1 110 90.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 89.4
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 92.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 90.3
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 90.3
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 87.6
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-47 193.4 113 89.4
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.0e-47 193.4 110 90.0
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 88.5
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 91.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 88.5
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.9e-47 191.8 113 89.4
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.9e-47 191.8 113 89.4
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.9e-47 191.8 116 87.1
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 88.5
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 88.5
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 88.5
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 6.5e-47 190.7 111 90.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 6.5e-47 190.7 116 84.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.0
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 89.4
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.4e-46 189.5 117 83.8
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.5e-46 188.7 116 83.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 5.5e-46 187.6 114 86.8
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 81.0
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.6e-45 186.0 108 88.0
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 83.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 4.6e-45 184.5 105 89.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 6.1e-45 184.1 152 68.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 6.1e-45 184.1 113 84.1
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 6.1e-45 184.1 116 85.3
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.4e-44 183.0 116 81.9
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-44 182.6 126 79.4
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 6.7e-44 180.6 116 84.5
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 3.3e-43 178.3 200 56.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.7e-42 176.0 113 75.2
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.8e-42 175.3 112 77.7
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 4.8e-42 174.5 109 79.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.4e-38 162.9 101 84.2
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 4.2e-38 161.4 88 95.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.6e-37 159.5 109 72.5
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.6e-37 158.3 89 87.6
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.4e-36 156.4 89 89.9
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.7e-36 154.1 117 75.2
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.5e-35 152.9 88 88.6
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.7e-34 149.4 88 87.5
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.4e-33 145.6 91 81.3
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.1e-33 144.8 102 75.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.2e-32 143.3 88 83.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.7e-32 140.6 85 83.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 3.8e-31 138.3 105 72.4
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 3.8e-31 138.3 105 72.4
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 6.5e-31 137.5 81 86.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.9e-30 136.0 72 91.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.2e-30 135.2 73 94.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.7e-29 131.3 67 95.5
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.4e-28 129.8 83 85.5
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.1e-25 120.2 106 51.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.4e-25 119.8 73 86.3
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.1e-25 118.6 73 84.9
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 1.6e-24 116.3 76 73.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.0e-23 113.6 86 72.1
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.1e-22 110.2 70 84.3
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.2e-22 108.2 71 76.1
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.7e-21 105.5 107 63.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.0e-15 87.0 61 73.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 5.0e-15 84.7 51 88.2
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 7.2e-14 80.9 50 88.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 3.6e-13 78.6 45 93.3
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 3.6e-13 78.6 45 93.3
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-08 63.5 41 80.5
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 5.9e-08 61.2 57 66.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 5.0e-07 58.2 41 80.5


User provided reference genes

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