Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1893.6 934 100.0
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1798.5 938 94.8
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1747.6 938 92.1
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1691.4 938 89.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1662.9 939 88.1
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1652.1 942 87.8
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1638.2 941 86.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1601.3 938 85.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1597.0 938 85.2
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1596.6 938 85.0
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1577.4 939 84.8
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1574.3 939 83.9
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1572.8 940 83.7
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1535.8 938 82.8
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1535.8 938 82.8
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1470.7 930 79.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1329.3 916 73.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1266.1 755 83.3
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1205.3 933 66.7
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 941 64.8
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 935 64.8
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1191.0 938 64.7
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1190.6 947 65.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1188.7 943 65.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1187.2 938 65.0
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 933 65.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 940 64.7
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1184.5 980 62.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1176.4 943 63.5
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 948 63.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1167.1 956 63.8
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1161.4 938 64.4
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 948 63.1
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1156.0 949 63.4
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 965 62.0
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 938 62.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 955 63.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 956 62.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 933 62.4
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 946 61.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 957 61.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 929 63.7
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 923 63.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 928 63.4
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 967 61.9
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 932 62.4
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 955 61.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 944 62.5
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 986 60.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 924 62.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1116.7 933 62.6
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 936 62.7
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1113.2 931 61.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1111.7 924 61.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 945 61.7
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 1013 58.1
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 928 61.5
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 925 60.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 932 61.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 943 62.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 1013 57.9
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 927 61.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 926 62.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 850 65.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1100.5 934 61.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1098.2 938 61.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 1013 57.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 949 61.4
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 973 59.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 965 59.7
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 941 60.8
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 1014 58.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 933 60.9
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 943 61.0
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 979 59.3
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 922 59.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 765 72.3
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 1022 57.0
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 1.3e-310 1069.7 932 61.3
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.8e-309 1065.8 928 59.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 2.2e-307 1058.9 895 61.5
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 3.8e-307 1058.1 992 57.9
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 8.5e-307 1057.0 927 60.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 944 59.6
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 5.5e-306 1054.3 1047 56.0
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 7.2e-306 1053.9 977 57.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 4.7e-305 1051.2 951 57.9
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.2e-303 1046.6 962 57.0
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-303 1046.6 948 56.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 3.5e-300 1035.0 941 58.8
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 5.9e-300 1034.2 942 56.2
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.6e-297 1026.2 944 57.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 4.7e-297 1024.6 1048 53.6
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 4.0e-296 1021.5 922 58.7
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 7.5e-295 1017.3 931 57.4
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.1e-293 1013.4 661 77.6
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 9.2e-293 1010.4 848 62.5
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-292 1010.0 915 57.8
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.3e-291 1006.5 817 63.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.7e-291 1006.1 1057 52.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 3.3e-290 1001.9 895 58.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.3e-290 1001.5 929 56.4
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 7.3e-290 1000.7 864 60.6
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 5.7e-287 991.1 941 56.2
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 3.2e-285 985.3 927 55.9
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.1e-285 984.9 1050 52.5
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 7.3e-282 974.2 968 53.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.6e-281 973.0 862 60.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.4e-280 969.9 930 56.1
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.2e-280 968.0 1167 48.4
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.2e-276 956.8 964 54.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.2e-276 956.8 937 54.9
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 8.6e-275 950.7 962 53.6
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.3e-274 948.7 812 60.8
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 9.6e-250 867.5 914 51.8
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 7.1e-245 851.3 976 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 5.1e-243 845.1 875 51.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.1e-241 839.7 685 63.8
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 6.4e-238 828.2 840 51.8
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 8.4e-238 827.8 955 50.2
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.8e-233 812.8 1124 42.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.4e-208 730.7 719 54.4
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 3.0e-187 659.8 649 56.2
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.2e-185 653.7 412 77.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-184 651.4 664 55.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 8.6e-166 588.6 757 47.0
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.6e-159 566.2 360 76.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.3e-157 560.1 405 69.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-155 554.7 387 72.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-135 488.4 462 58.4
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-124 451.8 292 74.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.5e-122 444.9 287 74.2
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.2e-119 435.3 292 72.3
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 7.4e-117 426.0 577 46.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.1e-116 424.5 731 39.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.8e-116 424.1 564 45.9
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.6e-111 406.8 474 48.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-103 382.1 321 59.2
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.4e-99 368.6 322 56.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 4.4e-93 347.1 213 77.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.7e-71 274.6 165 85.5
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 5.7e-61 240.4 148 85.1
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-53 214.5 139 69.8
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.1e-46 191.4 214 46.3
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 5.1e-41 174.1 137 64.2
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.6e-33 146.7 94 73.4
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.4e-29 134.4 121 52.1
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.2e-27 128.3 76 80.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-26 125.6 114 50.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.3e-24 117.1 86 60.5
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 2.0e-21 109.0 160 43.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-19 102.8 66 69.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 6.0e-18 97.4 275 31.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.8e-18 97.1 280 32.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-15 89.7 47 89.4
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.6e-15 89.4 61 68.9
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 2.6e-13 82.0 144 40.3
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.5e-13 81.3 82 51.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 8.4e-12 77.0 56 60.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 8.4e-12 77.0 56 60.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.4e-11 75.5 66 47.0
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.6e-10 72.8 56 58.9
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.3e-08 64.7 68 48.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.3e-08 64.7 62 48.4
BcaB04g18222 Brassica carinata HOM05D010251 ORTHO05D090319 9.6e-08 63.5 199 28.1
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.1e-07 62.4 62 50.0
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.1e-07 62.4 43 62.8
BcaB05g23625 Brassica carinata HOM05D000526 ORTHO05D015983 4.0e-06 58.2 38 81.6
C05p49240 Brassica napus HOM05D019709 ORTHO05D001800 9.0e-06 57.0 38 73.7


User provided reference genes

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