Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.5e-156 556.2 302 100.0
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.8e-126 454.9 310 84.8
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 1.4e-117 426.8 320 80.6
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 5.7e-103 378.3 315 75.2
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 6.5e-99 364.8 323 71.5
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 1.9e-90 336.7 320 68.1
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 5.0e-83 312.0 312 67.0
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 5.0e-83 312.0 312 67.0
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 8.6e-83 311.2 312 66.7
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 4.4e-79 298.9 308 63.6
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.5e-74 283.9 326 62.0
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 3.2e-69 266.2 312 61.2
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 4.0e-64 249.2 308 58.1
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 1.1e-56 224.6 343 50.4
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 2.2e-30 137.1 291 40.5
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 8.4e-30 135.2 322 39.8
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 1.9e-29 134.0 305 38.0
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 4.2e-29 132.9 248 46.0
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 7.1e-29 132.1 305 39.0
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 3.5e-28 129.8 309 40.1
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 6.0e-28 129.0 306 39.5
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 6.0e-28 129.0 305 37.0
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 3.0e-27 126.7 314 38.5
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 3.9e-27 126.3 315 39.0
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 1.5e-26 124.4 298 37.9
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 1.9e-26 124.0 312 37.5
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 7.4e-26 122.1 324 37.3
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 3.7e-25 119.8 244 43.0
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 6.2e-25 119.0 301 36.2
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 8.1e-25 118.6 309 36.9
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 1.4e-24 117.9 323 34.4
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 1.4e-24 117.9 323 36.5
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 6.9e-24 115.5 311 36.0
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 2.0e-23 114.0 321 34.9
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 1.3e-22 111.3 304 34.9
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.3e-22 111.3 314 34.7
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 2.2e-22 110.5 268 39.9
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 2.2e-22 110.5 326 36.5
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 2.9e-22 110.2 249 39.4
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 2.9e-22 110.2 298 33.9
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 1.4e-21 107.8 241 40.7
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 1.4e-21 107.8 241 40.7
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.2e-21 106.3 308 35.7
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 4.2e-21 106.3 307 37.5
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 5.5e-21 105.9 299 35.1
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 7.1e-21 105.5 307 37.1
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 9.3e-21 105.1 298 34.2
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 1.6e-20 104.4 244 41.4
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 2.1e-20 104.0 304 34.5
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 4.6e-20 102.8 301 33.6
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 4.6e-20 102.8 301 32.9
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 6.0e-20 102.4 322 34.8
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 7.9e-20 102.1 241 39.4
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 7.9e-20 102.1 308 36.0
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 7.9e-20 102.1 303 35.3
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 1.0e-19 101.7 308 34.4
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 1.8e-19 100.9 299 34.1
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 3.0e-19 100.1 301 36.5
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 1.9e-18 97.4 311 33.4
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 4.3e-18 96.3 300 33.7
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 7.4e-18 95.5 296 32.8
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 1.3e-17 94.7 299 32.8
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 2.1e-17 94.0 305 32.5
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 1.1e-16 91.7 260 36.9
AL1G31860 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 1.8e-16 90.9 295 36.6
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 3.1e-16 90.1 292 33.2
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 3.1e-16 90.1 273 35.9
AL1G37050 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.1e-16 89.7 300 37.3
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 5.3e-16 89.4 304 32.9
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 9.0e-16 88.6 299 33.8
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.2e-15 88.2 296 32.4
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.5e-15 87.8 316 33.2
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 1.5e-15 87.8 312 30.8
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 2.6e-15 87.0 307 33.2
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 2.6e-15 87.0 304 33.9
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 7.6e-15 85.5 296 32.4
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 7.6e-15 85.5 296 32.4
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 7.6e-15 85.5 296 32.4
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 7.6e-15 85.5 299 35.1
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 1.0e-14 85.1 304 31.9
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 2.2e-14 84.0 297 32.3
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 2.2e-14 84.0 297 32.3
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 2.2e-14 84.0 296 32.8
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 2.2e-14 84.0 300 33.7
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 3.8e-14 83.2 147 43.5
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 5.0e-14 82.8 302 31.1
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.1e-13 81.6 273 36.3
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 2.5e-13 80.5 306 32.0
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 5.5e-13 79.3 326 31.6
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.6e-12 77.8 302 30.1
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 3.5e-12 76.6 292 31.8
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 4.6e-12 76.3 303 30.0
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 3.0e-11 73.6 159 42.1
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 3.0e-11 73.6 299 32.4
Aa31LG9G15870 Aethionema arabicum HOM05D005197 ORTHO05D006263 6.7e-11 72.4 164 39.0
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 1.1e-10 71.6 302 32.5
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 1.6e-09 67.8 271 32.8
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.8e-09 66.2 298 29.9
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 8.2e-09 65.5 307 26.7
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 3.1e-08 63.5 302 28.1
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 5.3e-08 62.8 178 38.2
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 6.9e-08 62.4 298 31.2
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 5.9e-07 59.3 304 30.3
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 7.7e-07 58.9 111 41.4
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 1.7e-06 57.8 290 30.3
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 6.5e-06 55.8 301 30.2


User provided reference genes

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