Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 3.8e-304 1047.3 525 100.0
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 6.5e-280 966.8 525 93.0
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 6.6e-264 913.7 520 88.8
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 5.9e-257 890.6 535 85.2
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 1.5e-247 859.4 534 81.8
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 6.4e-235 817.4 526 79.5
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 9.2e-234 813.5 529 78.6
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 4.6e-233 811.2 531 78.7
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 6.2e-230 800.8 531 77.6
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 8.1e-230 800.4 531 77.4
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.1e-226 790.0 553 75.6
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 9.9e-212 740.3 517 72.0
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.3e-166 590.5 476 60.5
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.8e-165 586.6 476 60.3
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.2e-164 583.9 470 61.1
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 2.5e-162 576.2 488 61.5
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.3e-160 569.7 484 59.3
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 8.8e-160 567.8 472 60.6
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 1.5e-159 567.0 488 59.4
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 1.3e-158 563.9 461 61.6
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 1.3e-158 563.9 422 64.2
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 8.3e-158 561.2 480 59.4
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 2.7e-156 556.2 479 57.6
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 2.7e-156 556.2 469 59.1
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 6.5e-155 551.6 445 61.3
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 1.9e-154 550.1 469 58.2
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 4.2e-154 548.9 474 57.8
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.6e-153 547.0 459 58.6
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 2.7e-153 546.2 479 58.0
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 3.6e-153 545.8 458 59.6
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 4.7e-153 545.4 467 57.8
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 6.1e-153 545.0 480 57.5
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 1.0e-152 544.3 301 88.7
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 1.4e-152 543.9 478 57.5
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 4.0e-152 542.3 477 56.6
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 4.0e-152 542.3 476 57.4
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 1.2e-151 540.8 478 56.9
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 1.2e-151 540.8 472 58.9
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 1.5e-151 540.4 474 54.6
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 7.5e-151 538.1 478 56.9
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 9.8e-151 537.7 467 57.4
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.7e-150 537.0 478 56.1
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 1.7e-150 537.0 406 63.8
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 1.7e-150 537.0 511 53.2
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 2.2e-150 536.6 468 57.9
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 2.2e-150 536.6 476 56.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 2.8e-150 536.2 477 57.0
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.8e-150 536.2 486 55.8
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.4e-149 533.9 480 58.3
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.4e-149 533.9 480 57.1
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 1.4e-149 533.9 477 56.8
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 4.1e-149 532.3 439 58.1
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 4.1e-149 532.3 479 56.6
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 5.4e-149 531.9 413 63.0
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 5.4e-149 531.9 425 62.1
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 7.0e-149 531.6 477 56.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 9.2e-149 531.2 413 62.7
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.6e-148 530.4 486 54.9
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 2.0e-148 530.0 475 56.8
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 4.5e-148 528.9 468 57.1
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 4.5e-148 528.9 470 56.0
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.0e-147 527.7 488 55.1
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 3.8e-147 525.8 451 57.4
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 8.6e-147 524.6 476 55.9
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 9.5e-146 521.2 484 53.3
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 9.5e-146 521.2 471 56.5
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 1.2e-145 520.8 470 56.0
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 8.0e-145 518.1 470 55.7
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 4.0e-144 515.8 462 56.3
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 4.4e-143 512.3 480 54.8
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 4.4e-143 512.3 441 56.7
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 1.7e-142 510.4 502 52.8
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 2.9e-142 509.6 410 60.0
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 8.3e-142 508.1 439 56.7
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.4e-141 507.3 475 53.9
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 9.2e-141 504.6 388 63.7
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 2.7e-140 503.1 441 56.5
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 4.6e-140 502.3 491 53.2
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 3.3e-138 496.1 418 56.0
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 1.4e-136 490.7 515 51.1
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 4.9e-134 482.3 426 57.3
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 1.3e-131 474.2 483 53.0
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.1e-120 438.0 368 55.2
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 8.1e-113 411.8 402 49.3
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 3.2e-109 399.8 286 66.1
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.6e-108 397.5 416 48.1
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 2.1e-108 397.1 388 50.0
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 4.6e-108 396.0 305 63.9
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 7.8e-108 395.2 292 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 1.0e-107 394.8 475 42.7
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.3e-107 394.4 301 65.1
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.0e-95 354.0 279 62.7
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 2.1e-92 344.0 465 43.7
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 5.5e-85 319.3 356 46.6
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.0e-83 313.5 255 61.2
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 2.5e-82 310.5 483 38.5
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 7.4e-82 308.9 449 39.6
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 2.1e-81 307.4 239 63.6
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 4.8e-81 306.2 222 64.0
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.5e-79 301.2 518 37.3
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 2.2e-78 297.4 242 61.6
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 6.3e-73 279.3 240 59.2
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.7e-62 244.6 225 54.7
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.6e-58 230.7 486 34.4
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 8.2e-57 225.7 321 36.8
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.6e-55 220.7 166 59.0
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 1.5e-45 188.3 192 51.0
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.2e-42 178.7 411 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.2e-41 174.5 300 33.0
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 3.5e-39 167.2 103 77.7
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.5e-37 161.8 485 28.0
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 6.1e-36 156.4 219 37.9
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 5.2e-35 153.3 171 45.0
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 8.8e-35 152.5 179 44.1
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.2e-31 142.1 177 44.6
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.9e-29 134.8 96 68.8
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 6.4e-25 119.8 203 39.4
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.4e-24 118.6 94 63.8
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 6.8e-19 99.8 136 41.9
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.3e-17 95.5 97 52.6
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 2.0e-15 88.2 78 60.3
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 5.0e-14 83.6 63 55.6
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 3.1e-11 74.3 34 85.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.3e-09 66.2 58 53.4


User provided reference genes

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