Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 7.4e-36 153.7 98 100.0
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 5.1e-29 131.0 98 73.5
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 7.7e-25 117.1 98 71.4
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.5e-23 112.8 99 67.7
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.5e-23 112.1 99 67.7
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.5e-23 112.1 99 68.7
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.5e-23 112.1 99 68.7
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 4.2e-23 111.3 98 67.3
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 5.5e-23 110.9 98 79.6
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.2e-22 109.8 100 66.0
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 1.2e-22 109.8 99 67.7
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.6e-22 109.4 101 66.3
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.7e-22 108.6 99 73.7
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 8.8e-21 103.6 101 63.4
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 7.4e-20 100.5 96 64.6
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.7e-19 98.2 96 63.5
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.7e-19 98.2 96 63.5
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 7.7e-17 90.5 98 73.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 8.3e-11 70.5 52 75.0
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.4e-10 69.7 45 82.2
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.4e-10 69.7 59 64.4
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.1e-10 68.2 58 63.8
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 5.4e-10 67.8 60 66.7
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.4e-10 67.8 59 67.8
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.4e-10 67.8 58 65.5
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 7.0e-10 67.4 42 76.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 9.1e-10 67.0 49 69.4
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.2e-09 66.6 42 76.2
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 1.6e-09 66.2 61 63.9
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.6e-09 66.2 43 74.4
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.0e-09 65.9 62 64.5
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 2.7e-09 65.5 52 63.5
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.7e-09 65.5 58 67.2
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.5e-09 65.1 49 65.3
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.5e-09 65.1 49 65.3
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.5e-09 65.1 55 63.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.5e-09 65.1 60 58.3
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 4.5e-09 64.7 58 58.6
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 4.5e-09 64.7 55 56.4
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.5e-09 64.7 63 57.1
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 5.9e-09 64.3 58 56.9
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.9e-09 64.3 50 72.0
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.9e-09 64.3 50 72.0
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 5.9e-09 64.3 54 63.0
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 7.7e-09 63.9 40 75.0
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.0e-08 63.5 39 76.9
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.0e-08 63.5 39 76.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.0e-08 63.5 46 69.6
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.0e-08 63.5 57 57.9
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.0e-08 63.5 52 63.5
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.0e-08 63.5 63 55.6
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.0e-08 63.5 53 64.2
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.3e-08 63.2 59 57.6
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.3e-08 63.2 43 69.8
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.3e-08 63.2 49 67.3
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.3e-08 63.2 59 61.0
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.7e-08 62.8 58 58.6
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.7e-08 62.8 49 63.3
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.2e-08 62.4 49 59.2
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 57 57.9
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-08 62.0 57 54.4
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 3.8e-08 61.6 58 56.9
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 3.8e-08 61.6 58 56.9
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.8e-08 61.6 50 70.0
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.8e-08 61.6 50 70.0
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 3.8e-08 61.6 57 52.6
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 5.0e-08 61.2 42 69.0
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 5.0e-08 61.2 56 57.1
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 5.0e-08 61.2 42 69.0
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 5.0e-08 61.2 43 62.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 5.0e-08 61.2 39 74.4
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 5.0e-08 61.2 45 64.4
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 6.5e-08 60.8 50 62.0
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 8.5e-08 60.5 60 53.3
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 8.5e-08 60.5 57 54.4
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 8.5e-08 60.5 57 54.4
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.5e-08 60.5 39 71.8
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 1.1e-07 60.1 47 70.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.1e-07 60.1 57 56.1
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.5e-07 59.7 43 62.8
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.5e-07 59.7 58 55.2
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.5e-07 59.7 55 52.7
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.9e-07 59.3 42 66.7
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.9e-07 59.3 57 57.9
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.9e-07 59.3 54 61.1
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.9e-07 59.3 61 55.7
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 2.5e-07 58.9 59 55.9
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 3.2e-07 58.5 49 59.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 3.2e-07 58.5 53 60.4
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.2e-07 58.5 57 50.9
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 3.2e-07 58.5 59 55.9
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 4.2e-07 58.2 39 71.8
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 4.2e-07 58.2 44 61.4
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.5e-07 57.8 45 66.7
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.5e-07 57.8 45 66.7
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.5e-07 57.8 45 66.7
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 5.5e-07 57.8 46 60.9
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 5.5e-07 57.8 46 60.9
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 66.7
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 7.2e-07 57.4 57 54.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 69.2
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.2e-07 57.4 43 67.4
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 7.2e-07 57.4 43 67.4
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 7.2e-07 57.4 52 57.7
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 7.2e-07 57.4 57 50.9
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.4e-07 57.0 39 66.7
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.4e-07 57.0 39 66.7
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 9.4e-07 57.0 39 66.7
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 1.2e-06 56.6 41 75.6
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 1.2e-06 56.6 41 75.6
Thhalv10026664m.g Eutrema salsugineum HOM05D012071 ORTHO05D013970 1.2e-06 56.6 41 75.6
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.2e-06 56.6 59 54.2
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.2e-06 56.6 46 60.9
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 1.6e-06 56.2 39 79.5
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 1.6e-06 56.2 39 79.5
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 1.6e-06 56.2 39 79.5
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.6e-06 56.2 40 65.0
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.6e-06 56.2 46 58.7
Sp7g19100 Schrenkiella parvula HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 1.6e-06 56.2 57 56.1
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.1e-06 55.8 44 56.8
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 2.1e-06 55.8 42 59.5
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.1e-06 55.8 61 52.5
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.7e-06 55.5 41 65.9
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 2.7e-06 55.5 53 58.5
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 2.7e-06 55.5 39 66.7
AL7G33090 Arabidopsis lyrata HOM05D012071 ORTHO05D013970 3.6e-06 55.1 41 73.2
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 3.6e-06 55.1 61 52.5
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 3.6e-06 55.1 58 48.3
BolC7t45606H Brassica oleracea HOM05D012071 ORTHO05D013970 4.7e-06 54.7 38 78.9


User provided reference genes

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