Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 4.3e-186 654.4 312 100.0
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 2.1e-164 582.4 312 88.5
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 5.6e-162 574.3 312 85.9
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.8e-161 572.0 315 87.6
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.4e-160 569.7 312 85.9
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.0e-159 565.8 312 85.3
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.7e-158 562.8 312 84.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.9e-158 562.0 312 84.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 8.4e-158 560.5 313 85.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.4e-157 559.7 312 84.9
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 3.2e-157 558.5 312 84.6
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 1.9e-146 522.7 314 81.2
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.4e-128 463.4 320 70.9
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 4.8e-121 438.3 321 67.3
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.4e-120 436.8 319 67.1
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.8e-120 436.4 319 66.8
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.0e-119 433.0 319 66.5
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 7.7e-119 431.0 316 65.8
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 7.2e-117 424.5 332 63.3
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.0e-115 420.6 321 64.5
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.1e-114 417.2 322 62.1
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.5e-114 416.8 312 64.7
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 7.4e-114 414.5 319 65.2
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.8e-113 412.5 313 62.9
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 6.3e-113 411.4 354 59.0
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 6.3e-113 411.4 312 62.5
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.1e-112 410.6 312 60.6
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.4e-112 410.2 316 63.6
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.8e-112 409.8 318 62.9
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.1e-112 408.7 312 60.6
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 4.1e-112 408.7 324 63.3
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 4.1e-112 408.7 320 61.2
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.3e-112 408.3 316 62.7
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 5.3e-112 408.3 314 63.4
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 9.1e-112 407.5 322 61.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.5e-111 406.8 312 64.1
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.0e-111 406.4 313 62.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 2.0e-111 406.4 310 64.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 3.4e-111 405.6 317 62.5
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.7e-111 404.4 314 64.3
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.7e-110 403.3 314 64.6
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.7e-110 403.3 320 61.9
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 2.2e-110 402.9 314 64.6
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 2.9e-110 402.5 321 60.7
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 8.5e-110 401.0 324 64.5
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 2.5e-109 399.4 315 63.8
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.2e-109 398.7 324 59.3
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 5.5e-109 398.3 313 62.6
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 9.4e-109 397.5 318 60.1
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 3.0e-107 392.5 319 60.2
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.9e-107 392.1 310 64.5
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 6.7e-107 391.3 320 61.2
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.1e-106 390.6 311 60.5
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.5e-106 390.2 320 59.4
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 2.0e-106 389.8 318 61.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 5.7e-106 388.3 320 60.9
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 2.2e-105 386.3 318 60.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 8.2e-105 384.4 313 58.8
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.1e-104 384.0 269 69.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 4.1e-104 382.1 318 60.1
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.2e-103 380.6 310 61.9
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 5.9e-103 378.3 315 58.7
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.7e-102 376.7 312 60.9
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 5.0e-102 375.2 314 59.2
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 8.5e-102 374.4 321 57.9
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.1e-101 374.0 327 55.7
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.5e-101 372.9 323 57.6
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 7.2e-101 371.3 319 58.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.6e-100 370.2 319 58.3
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 2.7e-100 369.4 321 57.0
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 2.7e-100 369.4 315 58.1
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 4.7e-100 368.6 315 57.5
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 3.0e-99 365.9 362 52.2
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.7e-98 361.7 311 56.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 7.5e-98 361.3 310 57.4
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 9.7e-98 360.9 278 59.4
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 2.2e-97 359.8 325 57.5
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.4e-96 356.3 291 59.8
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 1.6e-95 353.6 324 56.2
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.0e-95 353.2 251 67.3
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 2.9e-94 349.4 237 70.0
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 9.8e-90 334.3 232 66.8
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.7e-89 333.6 234 67.5
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 8.3e-89 331.3 331 51.7
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 3.1e-88 329.3 236 66.9
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.0e-88 328.2 313 55.9
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 9.1e-88 327.8 313 55.6
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.2e-87 327.4 317 52.7
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 1.2e-87 327.4 322 54.0
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 4.5e-87 325.5 331 51.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 7.7e-87 324.7 317 52.7
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.2e-85 318.9 321 50.8
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 6.8e-83 311.6 329 52.9
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.8e-80 303.5 155 91.6
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.2e-80 301.2 318 48.4
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.9e-77 293.5 325 48.9
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.2e-73 280.0 315 49.2
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.7e-73 279.3 270 52.6
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.4e-72 277.3 309 47.6
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.0e-70 271.2 281 50.5
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.9e-70 269.2 171 70.8
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 4.3e-69 265.8 212 59.9
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.2e-68 264.2 312 44.9
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.6e-68 263.8 248 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 2.6e-66 256.5 229 53.3
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 9.8e-66 254.6 251 49.0
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.5e-63 246.1 222 56.3
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.1e-59 234.6 177 66.7
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 7.5e-58 228.4 175 64.6
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.2e-56 223.0 317 39.7
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 4.7e-52 209.1 215 49.8
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.1e-51 208.0 252 48.8
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 4.1e-48 196.1 127 69.3
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.3e-45 186.4 224 42.9
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.4e-43 181.0 143 62.9
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.2e-43 179.1 143 56.6
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 6.0e-39 165.6 238 40.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 3.3e-37 159.8 319 35.1
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 4.3e-37 159.5 435 28.0
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.1e-35 154.8 236 38.1
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.6e-34 150.2 144 50.0
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.1e-32 144.8 115 59.1
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.2e-32 142.9 170 46.5
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 8.2e-20 102.1 61 73.8
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.1e-16 91.7 53 73.6
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 2.1e-15 87.4 67 52.2
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 6.0e-15 85.9 51 72.5
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 9.7e-13 78.6 56 55.4
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.4e-11 74.7 45 68.9
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 2.7e-07 60.5 42 59.5
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.3e-06 58.2 37 64.9
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 3.0e-06 57.0 31 80.6


User provided reference genes

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