Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.0e-120 436.8 223 100.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 4.2e-111 404.8 223 93.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.3e-104 383.3 223 89.2
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 5.0e-104 381.3 223 87.9
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.7e-102 375.6 223 87.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.1e-100 370.2 223 85.7
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.5e-100 369.8 223 87.4
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 5.7e-100 367.9 223 85.7
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 9.7e-100 367.1 222 85.1
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 9.7e-100 367.1 222 85.1
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 8.2e-99 364.0 223 84.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 8.2e-99 364.0 223 84.8
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.4e-90 336.7 237 75.5
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 9.4e-87 323.9 223 71.3
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.6e-86 323.2 224 70.5
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 4.0e-85 318.5 221 70.1
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 2.6e-84 315.8 220 69.1
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 4.4e-84 315.1 223 70.9
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 5.7e-84 314.7 223 68.2
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.5e-84 314.3 220 70.0
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-83 313.2 222 68.5
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.7e-83 313.2 222 70.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.2e-83 312.8 219 69.9
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 2.2e-83 312.8 221 67.4
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.8e-83 312.4 219 69.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 8.3e-83 310.8 221 66.5
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 8.3e-83 310.8 222 68.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.3e-83 310.8 219 69.4
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.4e-82 310.1 224 67.9
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.4e-82 310.1 222 68.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.4e-82 310.1 221 71.0
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 2.4e-82 309.3 221 68.3
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.4e-82 309.3 219 68.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 5.4e-82 308.1 224 67.9
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.0e-82 307.8 221 68.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.1e-82 307.4 222 68.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.2e-81 307.0 220 68.2
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.2e-81 307.0 219 68.5
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.6e-81 306.6 219 68.0
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 2.0e-81 306.2 221 67.4
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.7e-81 305.8 221 66.1
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 2.7e-81 305.8 221 66.1
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 3.5e-81 305.4 221 66.1
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 4.5e-81 305.1 227 68.3
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 4.5e-81 305.1 219 68.5
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 5.9e-81 304.7 222 66.2
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.0e-80 303.9 220 68.2
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.0e-80 303.9 220 68.2
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 68.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.9e-80 302.4 221 66.1
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 3.8e-80 302.0 221 67.0
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 3.8e-80 302.0 221 66.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 6.5e-80 301.2 220 65.9
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 6.5e-80 301.2 221 65.6
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 6.5e-80 301.2 221 67.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 8.5e-80 300.8 220 68.2
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.5e-79 300.1 219 66.2
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 2.5e-79 299.3 220 66.8
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.5e-79 299.3 224 66.1
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 5.5e-79 298.1 219 66.2
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 7.2e-79 297.7 221 64.3
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 7.2e-79 297.7 223 64.6
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 7.2e-79 297.7 221 65.2
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 9.4e-79 297.4 219 67.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 9.4e-79 297.4 219 68.0
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.2e-78 297.0 221 67.0
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.6e-78 296.6 218 66.5
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 66.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.7e-78 295.8 222 64.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 66.5
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 3.6e-78 295.4 219 65.8
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 4.7e-78 295.0 246 59.8
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 4.7e-78 295.0 220 64.1
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 6.1e-78 294.7 219 66.2
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 8.0e-78 294.3 224 63.8
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-77 293.5 234 62.0
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.4e-77 293.5 221 63.8
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.8e-77 293.1 225 65.3
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.0e-77 292.0 222 63.5
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.5e-76 290.0 221 63.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 2.0e-76 289.7 223 63.7
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 4.4e-76 288.5 231 62.8
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.7e-76 288.1 222 62.6
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 7.5e-76 287.7 221 62.4
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 2.8e-75 285.8 223 65.0
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 8.3e-75 284.3 221 64.7
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 3.1e-74 282.3 221 62.9
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.1e-74 282.0 225 60.4
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.2e-73 280.4 211 64.0
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.2e-73 280.4 263 54.8
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 3.5e-73 278.9 240 59.6
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 5.9e-73 278.1 221 60.6
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 5.9e-73 278.1 222 62.6
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 5.9e-73 278.1 214 65.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 8.6e-72 274.2 225 60.9
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.5e-71 272.7 255 56.5
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 7.3e-71 271.2 225 60.9
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 7.3e-71 271.2 221 58.8
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.6e-70 270.0 222 61.3
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.1e-70 269.6 221 61.5
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 4.7e-70 268.5 221 57.5
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.0e-69 267.3 227 58.6
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.8e-69 266.5 221 60.2
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 4.0e-69 265.4 160 75.0
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.9e-67 258.5 158 72.8
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.4e-66 256.1 167 70.1
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 9.2e-66 254.2 248 55.2
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.0e-65 253.1 134 91.8
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.0e-65 253.1 222 59.9
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 4.6e-65 251.9 221 56.1
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.7e-64 250.0 219 58.0
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 3.0e-64 249.2 206 58.3
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.5e-63 246.9 214 59.3
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.3e-59 233.8 219 53.9
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.4e-59 231.5 179 61.5
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 5.4e-58 228.4 229 52.8
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 3.9e-56 222.2 191 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.5e-55 220.3 245 51.8
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-55 220.3 221 52.9
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.2e-49 200.7 120 73.3
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.9e-48 195.7 222 49.1
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 3.9e-48 195.7 217 47.5
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 9.5e-47 191.0 111 75.7
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 8.1e-46 188.0 239 45.2
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 6.6e-40 168.3 251 39.4
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.4e-36 156.0 157 49.0
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.2e-34 149.1 100 64.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 8.7e-32 141.4 178 44.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 4.6e-25 119.0 243 34.6
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.7e-11 73.9 41 80.5
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.3e-08 63.5 88 44.3
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.1e-08 62.4 43 65.1
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 6.7e-08 62.0 34 76.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-07 60.8 28 100.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.5e-07 60.8 38 65.8
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 6.3e-06 55.5 49 61.2
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 8.2e-06 55.1 39 71.8


User provided reference genes

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