Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-93 346.3 177 100.0
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.6e-60 235.0 171 76.6
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-47 193.4 151 70.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 6.6e-43 177.9 178 61.2
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.4e-24 116.3 93 63.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.7e-22 110.2 130 50.8
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-21 107.5 170 41.8
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 6.0e-20 101.7 162 37.7
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.3e-18 95.9 95 50.5
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.1e-17 93.2 105 45.7
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 3.7e-17 92.4 92 48.9
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 3.1e-16 89.4 86 47.7
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 5.3e-16 88.6 87 49.4
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 9.0e-16 87.8 124 37.9
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-15 87.0 136 37.5
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.5e-15 87.0 109 44.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.0e-15 86.7 90 46.7
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.6e-15 86.3 80 50.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 2.6e-15 86.3 105 44.8
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.4e-15 85.9 87 46.0
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 5.8e-15 85.1 94 45.7
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 5.8e-15 85.1 98 44.9
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 7.6e-15 84.7 87 49.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.0e-14 84.3 88 48.9
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.7e-14 83.6 96 36.5
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.2e-14 83.2 127 39.4
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.2e-14 83.2 168 36.3
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 2.2e-14 83.2 168 36.3
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.2e-14 83.2 86 45.3
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 2.2e-14 83.2 168 36.3
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 2.9e-14 82.8 89 43.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.9e-14 82.8 80 50.0
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 3.8e-14 82.4 86 45.3
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 3.8e-14 82.4 86 45.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 5.0e-14 82.0 87 43.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 5.0e-14 82.0 91 44.0
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.5e-14 81.6 107 43.0
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 6.5e-14 81.6 110 40.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 6.5e-14 81.6 89 40.4
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 6.5e-14 81.6 85 45.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 6.5e-14 81.6 80 48.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.4e-14 81.3 142 35.9
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 8.4e-14 81.3 170 32.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 8.4e-14 81.3 115 40.0
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 8.4e-14 81.3 163 33.1
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.4e-14 81.3 80 51.2
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.1e-13 80.9 78 48.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-13 80.5 87 44.8
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.9e-13 80.1 121 40.5
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.5e-13 79.7 105 38.1
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.5e-13 79.7 80 46.2
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.2e-13 79.3 171 31.0
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.2e-13 79.3 171 31.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.2e-13 79.3 98 40.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.2e-13 79.3 162 36.4
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 4.2e-13 79.0 176 31.2
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.2e-13 79.0 110 40.9
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 5.5e-13 78.6 87 44.8
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 7.2e-13 78.2 80 50.0
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 9.3e-13 77.8 177 32.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.3e-13 77.8 98 39.8
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.2e-12 77.4 87 46.0
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.6e-12 77.0 87 42.5
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.6e-12 77.0 86 45.3
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.6e-12 77.0 88 43.2
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.1e-12 76.6 162 33.3
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.1e-12 76.6 88 39.8
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-12 76.6 80 46.2
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.1e-12 76.6 89 41.6
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.7e-12 76.3 80 47.5
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 3.5e-12 75.9 194 30.4
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 3.5e-12 75.9 118 37.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.6e-12 75.5 170 31.2
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.1e-12 75.1 102 36.3
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.1e-12 75.1 183 32.8
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 7.9e-12 74.7 92 40.2
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.9e-12 74.7 84 40.5
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 7.9e-12 74.7 87 42.5
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.0e-11 74.3 103 36.9
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.3e-11 73.9 86 45.3
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.8e-11 73.6 87 40.2
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.3e-11 73.2 111 36.9
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.9e-11 72.4 148 35.1
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.9e-11 72.4 82 41.5
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 3.9e-11 72.4 119 37.0
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 3.9e-11 72.4 112 35.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.9e-11 72.4 81 43.2
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 3.9e-11 72.4 86 37.2
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 6.7e-11 71.6 91 37.4
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 6.7e-11 71.6 90 42.2
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.5e-10 70.5 86 37.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.5e-10 70.5 89 37.1
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.3e-10 69.3 107 38.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.4e-10 68.2 97 40.2
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.4e-10 68.2 97 40.2
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 9.7e-10 67.8 90 42.2
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.2e-09 66.6 125 37.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.2e-09 66.6 167 29.9
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.2e-09 66.6 83 36.1
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.8e-09 66.2 71 43.7
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 3.7e-09 65.9 57 54.4
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.7e-09 65.9 167 29.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 8.2e-09 64.7 78 46.2
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 8.2e-09 64.7 178 27.5
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.1e-08 64.3 77 39.0
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.4e-08 63.9 86 36.0
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.4e-08 63.9 91 38.5
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.3e-08 62.0 82 37.8
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 6.9e-08 61.6 98 33.7
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.9e-08 61.6 155 27.7
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.2e-07 60.8 87 42.5
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-07 60.5 97 37.1
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.5e-07 60.5 85 37.6
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.0e-07 60.1 28 100.0
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.0e-07 60.1 28 100.0
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.0e-07 60.1 87 42.5
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.6e-07 59.7 143 29.4
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 3.4e-07 59.3 97 36.1
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 3.4e-07 59.3 80 38.8
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.4e-07 59.3 80 37.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 4.5e-07 58.9 28 96.4
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 5.9e-07 58.5 28 96.4
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.9e-07 58.5 28 96.4
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 5.9e-07 58.5 99 30.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.9e-07 58.5 140 27.9
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 7.7e-07 58.2 95 37.9
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 7.7e-07 58.2 87 41.4
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 7.7e-07 58.2 87 41.4
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-06 57.8 29 89.7
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.0e-06 57.8 80 35.0
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.0e-06 57.8 87 42.5
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.0e-06 57.8 27 100.0
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.0e-06 57.8 27 100.0
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.3e-06 57.4 171 28.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.3e-06 57.4 28 92.9
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.3e-06 57.4 28 92.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.3e-06 57.4 28 92.9
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.3e-06 57.4 88 33.0
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-06 57.4 80 37.5
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.3e-06 57.4 87 35.6
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.3e-06 57.4 28 92.9
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.7e-06 57.0 122 27.9
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.2e-06 56.6 27 96.3
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.2e-06 56.6 27 96.3
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.2e-06 56.6 27 96.3
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.2e-06 56.6 27 96.3
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 2.2e-06 56.6 70 41.4
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-06 56.6 83 34.9
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-06 56.6 83 34.9
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 2.2e-06 56.6 27 96.3
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.9e-06 56.2 109 31.2
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.8e-06 55.8 86 31.4
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.8e-06 55.8 28 89.3
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 5.0e-06 55.5 110 35.5
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 5.0e-06 55.5 28 89.3
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 5.0e-06 55.5 28 89.3
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.5e-06 55.1 28 89.3
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 6.5e-06 55.1 124 29.0
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 6.5e-06 55.1 27 92.6
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 6.5e-06 55.1 28 85.7
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 6.5e-06 55.1 28 85.7
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 6.5e-06 55.1 27 92.6
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 8.5e-06 54.7 27 92.6
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 8.5e-06 54.7 26 96.2
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 8.5e-06 54.7 26 96.2
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 8.5e-06 54.7 28 85.7
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.5e-06 54.7 121 34.7


User provided reference genes

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