Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.4e-116 421.0 214 100.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 8.7e-98 360.5 211 88.2
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.9e-97 359.4 211 87.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.2e-92 341.7 211 84.4
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 3.5e-91 338.6 211 82.9
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.6e-88 329.7 212 83.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.4e-87 326.6 212 81.6
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.2e-84 315.1 212 79.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.1e-83 312.8 211 80.1
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 6.1e-83 311.2 202 81.7
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.8e-82 309.7 211 79.1
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.2e-80 302.8 214 76.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.7e-77 293.1 194 80.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.1e-73 280.4 209 70.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 5.7e-73 278.1 211 67.3
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.6e-59 233.4 211 56.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.6e-59 232.3 210 58.6
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 8.0e-59 231.1 211 54.0
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 8.0e-59 231.1 200 58.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.8e-58 229.9 201 58.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.3e-58 229.6 196 58.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 6.8e-58 228.0 213 56.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 6.8e-58 228.0 201 58.7
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 8.8e-58 227.6 200 57.5
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.2e-57 227.3 211 56.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.6e-57 226.1 213 57.7
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 4.4e-57 225.3 200 57.0
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.8e-56 222.6 214 57.0
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 2.8e-56 222.6 200 56.5
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 8.3e-56 221.1 211 54.0
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 8.3e-56 221.1 203 57.6
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.1e-55 220.7 201 56.2
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.1e-55 220.7 209 56.0
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.1e-55 220.7 211 53.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.8e-55 219.9 197 55.8
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.1e-55 219.2 178 62.9
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 4.1e-55 218.8 200 57.5
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.4e-55 218.4 212 54.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 7.0e-55 218.0 214 54.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.2e-54 217.2 200 55.0
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 2.7e-54 216.1 212 55.7
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 3.5e-54 215.7 198 56.6
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 3.5e-54 215.7 201 55.2
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 4.5e-54 215.3 214 55.6
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 5.9e-54 214.9 212 52.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 7.7e-54 214.5 213 54.0
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.0e-53 214.2 211 55.5
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.0e-53 214.2 213 53.1
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.0e-53 214.2 212 52.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.0e-53 214.2 170 66.5
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.7e-53 213.4 201 56.2
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.9e-53 212.6 200 55.0
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.9e-53 212.6 174 62.1
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.8e-53 212.2 168 64.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.0e-53 211.8 214 54.2
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.5e-53 211.5 177 58.2
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 8.5e-53 211.1 214 55.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.5e-53 211.1 189 59.8
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.5e-53 211.1 213 52.1
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.5e-53 211.1 211 52.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.1e-52 210.7 187 58.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.5e-52 210.3 211 55.5
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.5e-52 210.3 189 58.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.5e-52 209.5 214 51.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.2e-52 209.1 161 65.8
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.2e-52 209.1 165 61.8
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 5.5e-52 208.4 195 55.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.2e-51 207.2 212 52.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.1e-51 206.5 164 64.6
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.1e-51 206.5 193 57.5
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.7e-51 205.3 173 61.8
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.7e-51 205.3 204 54.9
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 6.1e-51 204.9 142 72.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 6.1e-51 204.9 212 51.4
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 8.0e-51 204.5 158 62.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.0e-50 204.1 188 58.0
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.4e-50 203.8 165 64.8
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.3e-50 203.0 173 60.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.3e-50 203.0 158 63.3
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.3e-50 203.0 200 54.5
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 5.2e-50 201.8 165 63.0
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 6.8e-50 201.4 186 57.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 8.8e-50 201.1 171 62.0
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 8.8e-50 201.1 204 52.9
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 8.8e-50 201.1 204 52.9
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.0e-49 199.9 173 59.0
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.6e-49 199.5 212 51.4
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.6e-49 199.5 200 53.5
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 3.4e-49 199.1 173 60.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 3.4e-49 199.1 138 71.0
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 7.5e-49 198.0 185 55.7
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.5e-49 198.0 171 59.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 9.8e-49 197.6 200 53.0
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.2e-48 196.4 160 61.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.8e-48 196.1 171 59.1
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.1e-47 194.1 215 51.2
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.1e-47 194.1 200 55.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.4e-47 193.7 170 57.6
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.4e-47 193.7 206 52.9
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.4e-47 193.7 200 51.5
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.4e-47 193.0 143 69.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.4e-47 193.0 214 50.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 7.0e-47 191.4 145 66.9
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.6e-46 190.3 145 66.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.0e-46 189.9 141 68.8
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.0e-46 189.9 191 53.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.3e-45 186.4 143 64.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.8e-45 185.7 142 64.8
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 5.0e-45 185.3 142 65.5
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.8e-42 176.8 211 47.4
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.8e-42 176.8 180 51.1
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 6.8e-42 174.9 136 61.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 8.9e-42 174.5 155 58.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.0e-41 173.3 211 46.4
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 7.5e-41 171.4 181 53.6
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.2e-40 169.9 145 60.0
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 9.2e-39 164.5 136 58.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.0e-38 163.3 132 62.9
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.6e-38 162.2 109 72.5
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.2e-34 148.7 149 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.8e-34 148.3 133 54.1
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.1e-31 141.0 139 55.4
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.4e-31 140.6 162 50.6
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 8.6e-29 131.3 169 43.2
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.1e-28 131.0 127 56.7
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 2.5e-28 129.8 151 43.7
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 5.6e-28 128.6 138 47.8
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.5e-25 120.6 130 42.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.4e-25 119.4 131 49.6
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 7.1e-23 111.7 144 41.7
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.6e-22 110.5 118 55.1
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 3.5e-22 109.4 144 41.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.0e-21 107.8 86 60.5
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.9e-20 103.6 88 62.5
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 4.1e-15 85.9 95 49.5
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.3e-13 80.9 128 40.6
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 5.6e-12 75.5 66 57.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.4e-07 60.8 44 65.9


User provided reference genes

Program Settings