Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 2.9e-74 282.0 158 100.0
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 6.3e-69 264.2 160 95.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 2.9e-66 255.4 158 93.0
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.1e-60 236.9 162 87.0
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 2.4e-60 235.7 162 86.4
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 9.1e-60 233.8 163 85.3
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.6e-59 233.0 160 87.5
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 5.9e-59 231.1 160 85.6
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 5.9e-59 231.1 160 85.6
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.3e-58 229.9 162 84.6
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 9.4e-57 223.8 163 84.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.6e-56 223.0 165 82.4
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 2.3e-55 219.2 160 83.8
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 2.3e-55 219.2 160 83.8
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 3.0e-55 218.8 163 82.2
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 5.2e-55 218.0 163 82.2
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-54 216.1 159 84.9
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 3.5e-51 205.3 160 79.4
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 3.5e-51 205.3 160 79.4
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 3.5e-51 205.3 160 79.4
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 2.8e-45 185.7 162 71.0
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.2e-43 180.3 159 75.5
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.9e-34 149.1 137 67.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.0e-34 148.3 137 67.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.3e-33 145.6 137 67.2
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 5.6e-33 144.8 163 62.6
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 9.5e-33 144.1 155 61.3
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.2e-32 143.7 138 65.9
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.6e-32 143.3 156 64.7
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.1e-32 142.9 132 68.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 2.1e-32 142.9 155 63.2
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.8e-32 142.5 133 68.4
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.8e-32 142.5 158 61.4
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.6e-32 142.1 133 68.4
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 4.7e-32 141.7 139 65.5
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.3e-31 139.4 156 65.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.3e-31 139.4 160 63.1
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.0e-31 139.0 153 62.1
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 3.0e-31 139.0 163 60.1
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 3.0e-31 139.0 163 60.1
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 6.8e-31 137.9 153 61.4
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.8e-31 137.9 153 61.4
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.5e-30 136.7 140 62.9
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.6e-30 136.0 144 63.9
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 2.6e-30 136.0 153 61.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 3.4e-30 135.6 159 61.0
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 3.4e-30 135.6 157 59.9
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 5.7e-30 134.8 143 62.2
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 7.5e-30 134.4 160 60.0
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 9.8e-30 134.0 156 62.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.7e-29 133.3 138 63.8
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.7e-29 133.3 132 63.6
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.2e-29 132.9 137 65.0
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.2e-29 132.9 135 64.4
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.7e-29 132.1 153 60.1
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.7e-29 132.1 139 61.2
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 3.7e-29 132.1 153 61.4
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.7e-29 132.1 140 60.7
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 6.4e-29 131.3 159 58.5
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.4e-29 131.3 143 60.8
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.1e-28 130.6 131 64.1
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.4e-28 130.2 109 72.5
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.2e-28 129.0 163 56.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 3.2e-28 129.0 143 61.5
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 4.1e-28 128.6 143 59.4
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 5.4e-28 128.3 131 62.6
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.4e-28 128.3 155 59.4
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 5.4e-28 128.3 159 58.5
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 7.0e-28 127.9 170 58.8
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 7.0e-28 127.9 131 64.1
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 7.0e-28 127.9 132 64.4
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 9.2e-28 127.5 142 59.2
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 1.2e-27 127.1 135 63.0
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 3.5e-27 125.6 139 62.6
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 4.6e-27 125.2 141 58.2
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.3e-26 122.9 131 61.8
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.9e-26 122.1 133 60.9
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 3.9e-26 122.1 138 56.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 8.6e-26 120.9 134 63.4
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.1e-25 120.6 137 62.0
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.1e-25 120.6 131 61.8
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.5e-25 120.2 157 55.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.5e-25 120.2 157 55.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 2.5e-25 119.4 137 62.8
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 4.3e-25 118.6 157 56.1
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.6e-24 116.7 143 57.3
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 4.7e-24 115.2 76 81.6
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 4.7e-24 115.2 157 54.8
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 8.0e-24 114.4 172 52.9
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 8.0e-24 114.4 144 56.9
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.0e-23 114.0 162 54.9
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.4e-23 113.6 162 51.9
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 5.2e-23 111.7 203 48.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 6.8e-23 111.3 143 58.7
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.2e-22 110.5 122 61.5
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.6e-22 109.4 108 63.9
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 3.4e-22 109.0 118 61.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 4.4e-22 108.6 164 52.4
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 4.4e-22 108.6 160 56.2
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 7.5e-22 107.8 163 52.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.3e-21 107.1 72 79.2
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.3e-21 107.1 159 52.2
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 4.9e-21 105.1 145 54.5
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 4.9e-21 105.1 162 50.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 6.4e-21 104.8 130 58.5
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 8.3e-21 104.4 165 53.3
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 5.4e-20 101.7 87 66.7
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 7.0e-20 101.3 138 52.9
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 3.5e-19 99.0 136 58.1
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 3.5e-19 99.0 92 66.3
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.0e-19 98.2 59 89.8
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 6.0e-19 98.2 146 51.4
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 7.8e-19 97.8 66 81.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.0e-18 97.4 132 55.3
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 2.3e-18 96.3 77 71.4
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.5e-17 93.6 114 57.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 7.3e-17 91.3 90 63.3
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 7.3e-17 91.3 90 63.3
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 4.7e-16 88.6 100 61.0
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.8e-15 86.7 161 44.7
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 3.7e-13 79.0 73 76.7
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 5.4e-12 75.1 119 49.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.2e-12 74.3 121 52.1
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.7e-10 70.1 124 46.8
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.7e-10 70.1 117 53.0
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 3.9e-10 68.9 70 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 9.5e-09 64.3 120 47.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 9.5e-09 64.3 125 48.0
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 5.8e-06 55.1 46 67.4


User provided reference genes

Program Settings