Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.8e-77 292.7 177 100.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.5e-58 229.2 175 84.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.5e-50 202.6 174 73.6
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.7e-49 198.4 181 77.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 6.4e-46 188.0 180 74.4
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.4e-45 184.9 181 74.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.5e-44 182.2 184 72.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-43 180.3 172 57.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.0e-43 179.1 181 64.1
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.0e-43 179.1 193 66.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-43 178.7 172 57.6
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 3.9e-43 178.7 172 57.6
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-42 177.2 187 71.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-42 176.8 181 64.1
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 5.6e-42 174.9 181 65.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 7.3e-42 174.5 198 66.7
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-41 172.6 196 66.8
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.6e-41 172.2 181 64.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-40 169.9 181 63.5
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-40 169.9 203 64.5
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-40 169.9 203 64.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.0e-40 168.7 169 70.4
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-39 167.2 183 69.4
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-39 167.2 192 65.1
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-39 167.2 192 66.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.6e-39 166.0 181 55.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 4.4e-39 165.2 187 66.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 5.8e-39 164.9 169 55.6
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 5.8e-39 164.9 169 55.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 5.8e-39 164.9 169 55.6
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.3e-38 163.7 184 67.4
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.9e-38 162.5 188 59.6
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-37 160.6 199 60.3
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-37 160.2 175 69.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-37 160.2 209 62.2
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-37 159.5 175 69.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 5.4e-37 158.3 175 69.7
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 7.1e-37 157.9 205 62.0
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 3.5e-36 155.6 216 59.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.6e-36 155.2 194 64.4
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 6.0e-36 154.8 200 62.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.5e-34 150.2 189 63.0
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-34 150.2 175 68.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 7.3e-34 147.9 185 52.4
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.6e-33 145.6 188 59.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.1e-32 144.1 185 50.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.3e-32 141.7 189 52.4
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-31 139.8 166 51.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-30 137.1 189 48.7
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-30 137.1 197 48.7
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.7e-30 136.7 190 42.1
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.8e-30 135.6 189 48.7
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 8.4e-30 134.4 199 41.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.1e-29 134.0 200 42.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-29 133.7 187 55.6
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 7.1e-29 131.3 212 47.2
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 9.3e-29 131.0 199 50.8
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-28 130.6 191 58.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.2e-28 130.6 193 49.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-28 129.8 166 62.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.1e-28 129.8 166 62.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.7e-28 129.4 195 56.4
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 3.5e-28 129.0 190 46.3
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.5e-28 129.0 195 45.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.6e-28 128.6 200 51.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.8e-27 126.7 213 46.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.8e-27 126.7 213 46.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 2.3e-27 126.3 190 42.1
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 3.9e-27 125.6 189 41.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.1e-27 125.2 184 54.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 6.7e-27 124.8 189 47.1
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.7e-27 124.8 207 51.2
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.1e-26 124.0 200 44.0
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.9e-26 123.2 187 55.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.9e-26 123.2 199 50.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.9e-26 123.2 201 39.8
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-26 122.9 166 60.2
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-26 122.9 166 60.2
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.3e-26 122.1 220 50.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 5.6e-26 121.7 218 37.6
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 7.4e-26 121.3 192 56.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.6e-25 120.2 204 53.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.6e-25 120.2 189 54.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.1e-25 119.8 182 47.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.1e-25 119.8 193 46.1
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.1e-25 119.8 209 49.8
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.1e-25 119.8 193 48.2
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 2.8e-25 119.4 223 45.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.8e-25 119.4 193 45.1
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.8e-25 119.4 182 48.4
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 3.7e-25 119.0 199 54.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.8e-25 118.6 200 53.0
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 4.8e-25 118.6 194 38.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.1e-25 117.9 196 50.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 8.1e-25 117.9 191 56.0
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 8.1e-25 117.9 185 51.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 8.1e-25 117.9 185 51.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.4e-24 117.1 198 49.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.8e-24 116.7 199 48.2
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.8e-24 116.7 202 44.6
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-24 116.7 189 42.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.4e-24 116.3 193 52.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 3.1e-24 115.9 187 43.9
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.0e-24 115.5 201 44.3
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.3e-24 115.2 208 39.9
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 9.0e-24 114.4 213 49.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 9.0e-24 114.4 194 55.2
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 9.0e-24 114.4 139 46.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.2e-23 114.0 186 39.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.2e-23 114.0 212 50.5
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.2e-23 114.0 194 55.2
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.2e-23 114.0 199 45.7
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.5e-23 113.6 180 43.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.0e-23 113.2 184 46.7
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.6e-23 112.8 104 88.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.6e-23 112.8 194 46.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.4e-23 112.5 194 46.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 5.8e-23 111.7 202 44.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 7.6e-23 111.3 140 52.1
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 7.6e-23 111.3 189 39.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-22 110.9 201 53.2
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.3e-22 110.5 178 44.4
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.2e-22 109.8 223 37.2
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 6.5e-22 108.2 182 54.9
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 8.4e-22 107.8 180 53.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 8.4e-22 107.8 199 37.7
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.1e-21 107.5 209 47.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-21 107.1 197 44.2
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.4e-21 107.1 213 36.6
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-21 106.7 190 40.5
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.9e-21 106.7 228 45.2
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 3.2e-21 105.9 195 46.2
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.2e-21 105.9 179 54.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.2e-21 105.5 174 39.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.5e-21 105.1 184 38.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.1e-21 104.8 138 63.8
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 7.1e-21 104.8 233 44.6
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 9.3e-21 104.4 176 36.9
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.3e-21 104.4 135 67.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 9.3e-21 104.4 193 51.3
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.2e-20 104.0 151 41.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.5e-20 102.4 188 51.6
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 4.6e-20 102.1 170 42.9
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 6.0e-20 101.7 166 56.0
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 6.0e-20 101.7 211 36.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.9e-20 101.3 239 43.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.8e-19 100.1 218 31.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.8e-19 100.1 132 43.2
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.3e-19 99.8 147 40.1
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.0e-19 99.4 175 49.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 5.1e-19 98.6 173 42.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 6.7e-19 98.2 219 39.7
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.5e-18 97.1 129 54.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-18 97.1 177 39.0
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.9e-18 96.7 228 38.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.4e-18 94.7 153 57.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 8.2e-17 91.3 185 35.7
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 6.9e-16 88.2 231 32.5
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 4.5e-15 85.5 188 31.4
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 9.3e-13 77.8 146 34.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.9e-11 72.4 219 29.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 3.9e-11 72.4 130 40.0
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.3e-10 68.9 99 42.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.9e-08 61.6 192 38.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 9.0e-08 61.2 113 42.5
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-07 60.8 189 38.1
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-07 60.8 153 29.4
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-07 60.8 153 29.4
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.0e-07 60.1 189 38.1
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.0e-06 57.8 170 28.2
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.8e-06 55.8 170 27.6


User provided reference genes

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