Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.6e-205 719.2 355 100.0
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.2e-189 666.4 355 93.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 4.9e-178 627.9 358 89.4
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 4.3e-150 535.0 366 79.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 7.6e-147 524.2 355 78.0
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.3e-146 523.5 356 75.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.4e-145 520.0 356 78.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.6e-144 515.0 355 76.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-143 513.5 355 76.6
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 8.7e-143 510.8 355 76.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 7.3e-142 507.7 356 74.7
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-141 506.9 357 74.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.8e-141 505.8 359 74.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-140 503.4 359 75.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 9.0e-140 500.7 359 73.3
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 9.0e-140 500.7 361 75.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.4e-131 472.2 336 73.5
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.3e-118 428.7 362 67.7
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-113 413.7 292 76.4
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.6e-104 382.5 354 61.6
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.4e-95 354.0 380 56.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 7.0e-92 341.7 364 55.2
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.5e-91 339.3 375 53.6
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.7e-90 337.0 376 53.5
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-86 323.2 232 77.6
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.6e-86 323.2 371 53.6
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.2e-85 320.1 379 52.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.8e-84 317.0 379 52.0
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 5.3e-84 315.5 354 52.5
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.5e-83 312.4 368 50.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-82 311.2 368 49.5
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.2e-82 310.1 373 48.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.9e-82 309.7 375 49.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.0e-82 308.9 374 48.4
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.5e-81 306.6 371 50.4
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 4.2e-81 305.8 371 50.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.6e-80 303.9 377 48.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.1e-80 303.5 379 48.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 8.0e-80 301.6 360 51.1
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-79 301.2 372 47.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.8e-79 300.4 353 49.0
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.3e-79 300.1 376 50.3
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.0e-79 299.7 376 50.0
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 6.8e-79 298.5 382 46.3
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 9.7e-78 294.7 353 51.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.7e-77 293.9 375 49.6
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.8e-77 292.4 380 48.4
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.8e-77 292.4 380 48.4
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 6.3e-77 292.0 380 48.4
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.1e-76 291.2 380 48.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-76 290.4 371 48.0
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.8e-76 290.4 376 48.9
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.8e-76 290.4 378 47.6
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 3.1e-76 289.7 379 47.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.1e-76 289.7 400 48.8
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 4.1e-76 289.3 374 51.1
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.6e-75 287.3 375 48.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 5.9e-75 285.4 372 47.3
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.8e-74 282.7 358 48.6
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.0e-71 274.6 373 49.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-71 273.9 367 47.1
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 4.0e-71 272.7 364 45.6
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.8e-71 271.9 359 46.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.5e-70 270.8 363 45.2
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 2.0e-70 270.4 363 45.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.6e-70 270.0 382 46.1
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.8e-70 268.1 389 45.0
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.2e-69 266.9 362 45.3
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.8e-69 266.5 361 46.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.8e-69 265.8 366 46.4
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 8.3e-69 265.0 333 47.4
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.4e-68 264.2 367 45.2
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.4e-68 263.5 378 43.4
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 7.0e-68 261.9 355 46.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 9.1e-68 261.5 376 46.5
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.0e-67 260.4 364 44.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.5e-67 259.6 358 45.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.5e-67 259.2 378 44.7
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.8e-64 250.0 369 44.2
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.0e-63 246.5 371 43.4
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.4e-62 243.0 354 42.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 3.4e-62 243.0 443 38.4
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.9e-61 239.2 427 39.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 8.3e-61 238.4 368 40.2
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.8e-60 237.3 389 39.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.4e-60 236.9 373 40.8
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.6e-59 234.2 356 43.0
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 4.5e-59 232.6 423 40.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.0e-58 231.5 356 42.1
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.0e-58 231.5 367 40.6
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.5e-57 226.9 372 41.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.6e-57 225.7 372 40.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 9.5e-57 224.9 331 43.8
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.6e-56 224.2 365 40.8
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 8.0e-56 221.9 371 41.0
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.8e-55 220.7 385 39.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 2.0e-54 217.2 354 39.5
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.2e-51 208.0 369 40.7
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.0e-51 207.2 359 39.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.7e-51 206.8 246 50.0
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.0e-51 205.7 338 42.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.3e-50 203.8 119 77.3
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.0e-50 203.4 374 37.7
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.4e-47 194.5 200 53.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 5.8e-46 189.1 349 38.1
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.5e-43 179.9 370 34.6
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.3e-42 177.9 240 47.5
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.9e-42 176.4 239 46.9
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 8.6e-42 175.3 364 38.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.1e-41 174.9 341 36.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.1e-41 174.9 389 32.1
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.9e-41 174.1 186 49.5
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.1e-40 168.7 186 48.4
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 8.1e-40 168.7 359 35.1
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.2e-39 166.0 207 45.9
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 2.4e-36 157.1 337 36.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 7.1e-36 155.6 337 34.7
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.5e-35 153.3 351 33.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.0e-34 151.8 361 30.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.5e-33 147.9 290 37.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.9e-33 147.5 214 44.4
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 5.6e-33 146.0 340 31.5
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.1e-31 141.7 344 34.3
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-28 131.3 361 32.4
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.3e-25 120.2 128 55.5
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 6.9e-23 112.5 187 39.6
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 4.9e-21 106.3 83 60.2
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 6.0e-19 99.4 142 50.0
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.3e-16 91.7 349 28.9
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.0e-15 85.5 163 33.7
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.2e-14 85.1 164 33.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.5e-14 83.2 149 38.3
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 2.2e-13 80.9 123 42.3
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.9e-13 79.7 148 37.2
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.4e-12 78.2 169 31.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-11 75.1 164 31.7
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-11 75.1 161 32.3
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.1e-07 62.0 341 23.8


User provided reference genes

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