Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G27380 Arabidopsis thaliana HOM05D003040 ORTHO05D003443 1.3e-41 172.6 85 100.0
AL1G40780 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 3.2e-35 151.4 78 92.3
Carub.0001s2591 Capsella rubella HOM05D003040 ORTHO05D003443 8.7e-33 143.3 79 89.9
Thhalv10009145m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 2.1e-31 138.7 84 82.1
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 2.4e-30 135.2 77 83.1
BcaC01g01617 Brassica carinata HOM05D003040 ORTHO05D003443 2.2e-28 128.6 80 82.5
BolC3t19663H Brassica oleracea HOM05D003040 ORTHO05D003443 2.2e-28 128.6 80 82.5
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 6.4e-28 127.1 77 83.1
C03p73720 Brassica napus HOM05D003040 ORTHO05D003443 8.4e-28 126.7 80 81.2
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 1.1e-27 126.3 82 79.3
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 2.4e-27 125.2 77 81.8
A08p26350 Brassica napus HOM05D003040 ORTHO05D003443 3.2e-27 124.8 80 80.0
BraA08t34586Z Brassica rapa HOM05D003040 ORTHO05D003443 3.2e-27 124.8 80 80.0
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 5.5e-27 124.0 84 78.6
BraA07t28972Z Brassica rapa HOM05D003040 ORTHO05D003443 5.5e-27 124.0 84 78.6
BraA09t39362Z Brassica rapa HOM05D003040 ORTHO05D003443 3.0e-25 118.2 78 79.5
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 3.9e-25 117.9 78 79.5
BolC5t31327H Brassica oleracea HOM05D003040 ORTHO05D003443 3.9e-25 117.9 78 79.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.5e-24 115.9 78 76.9
BcaB03g13990 Brassica carinata HOM05D003040 ORTHO05D003443 1.5e-24 115.9 78 76.9
C07p17820 Brassica napus HOM05D003040 ORTHO05D003443 2.5e-24 115.2 96 67.7
BolC7t42288H Brassica oleracea HOM05D003040 ORTHO05D003443 2.5e-24 115.2 96 67.7
THA.LOC104825502 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 5.8e-21 104.0 74 71.6
BcaC06g35281 Brassica carinata HOM05D003040 ORTHO05D003443 3.9e-17 91.3 54 83.3
A09p38560 Brassica napus HOM05D003040 ORTHO05D003443 1.5e-16 89.4 49 85.7
C05p26080 Brassica napus HOM05D003040 ORTHO05D003443 9.7e-16 86.7 49 81.6
THA.LOC104807545 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 4.1e-14 81.3 74 62.2
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 2.6e-13 78.6 62 61.3
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 5.9e-13 77.4 56 64.3
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.7e-13 77.0 62 56.5
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 1.0e-12 76.6 62 56.5
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.0e-12 76.6 62 56.5
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.0e-12 76.6 62 56.5
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.0e-12 76.6 62 56.5
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 1.3e-12 76.3 55 63.6
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 2.2e-12 75.5 62 54.8
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 2.9e-12 75.1 62 62.9
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 2.9e-12 75.1 56 62.5
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 2.9e-12 75.1 56 62.5
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 3.8e-12 74.7 56 62.5
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 3.8e-12 74.7 67 58.2
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 6.5e-12 73.9 72 55.6
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 6.5e-12 73.9 56 62.5
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 8.5e-12 73.6 56 60.7
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 1.9e-11 72.4 56 62.5
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 3.2e-11 71.6 55 63.6
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 3.2e-11 71.6 69 47.8
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 4.2e-11 71.2 55 63.6
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 4.2e-11 71.2 57 64.9
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 4.2e-11 71.2 57 63.2
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 5.5e-11 70.9 56 58.9
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 7.2e-11 70.5 54 57.4
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 9.4e-11 70.1 58 56.9
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 1.2e-10 69.7 56 55.4
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 1.2e-10 69.7 57 64.9
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 1.6e-10 69.3 56 60.7
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 1.6e-10 69.3 68 54.4
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 1.6e-10 69.3 56 57.1
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 2.1e-10 68.9 56 58.9
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 2.7e-10 68.6 57 63.2
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 2.7e-10 68.6 56 53.6
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 2.7e-10 68.6 52 67.3
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 2.7e-10 68.6 63 57.1
PGR031G3166 Punica granatum HOM05D003040 ORTHO05D003443 2.7e-10 68.6 71 43.7
Glyma.18G283500 Glycine max HOM05D003040 ORTHO05D003443 3.6e-10 68.2 59 49.2
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 3.6e-10 68.2 56 53.6
Cpa.g.c26337.4 Carica papaya HOM05D003040 ORTHO05D003443 7.9e-10 67.0 55 52.7
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 7.9e-10 67.0 56 60.7
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 7.9e-10 67.0 57 63.2
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 7.9e-10 67.0 56 62.5
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 1.0e-09 66.6 52 55.8
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 1.4e-09 66.2 53 54.7
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.4e-09 66.2 53 54.7
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.4e-09 66.2 70 51.4
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 1.8e-09 65.9 53 56.6
Duzib106G1609 Durio zibethinus HOM05D003040 ORTHO05D003443 1.8e-09 65.9 61 54.1
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.8e-09 65.9 56 57.1
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 3.0e-09 65.1 56 53.6
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 3.0e-09 65.1 57 54.4
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.9e-09 64.7 53 54.7
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.9e-09 64.7 53 54.7
HanXRQChr02g0039671 Helianthus annuus HOM05D003040 ORTHO05D003443 3.9e-09 64.7 69 50.7
Lj1g0018351 Lotus japonicus HOM05D003040 ORTHO05D003443 3.9e-09 64.7 62 48.4
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 3.9e-09 64.7 57 50.9
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 3.9e-09 64.7 52 61.5
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 5.1e-09 64.3 56 60.7
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 6.7e-09 63.9 54 53.7
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 6.7e-09 63.9 58 55.2
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 6.7e-09 63.9 56 53.6
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 6.7e-09 63.9 56 57.1
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 6.7e-09 63.9 55 52.7
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 8.8e-09 63.5 62 48.4
PSO017G5902 Papaver somniferum HOM05D003040 ORTHO05D003443 8.8e-09 63.5 63 57.1
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 8.8e-09 63.5 59 50.8
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 8.8e-09 63.5 58 56.9
PSO675G7126 Papaver somniferum HOM05D003040 ORTHO05D003443 1.1e-08 63.2 65 56.9
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 1.5e-08 62.8 58 55.2
MELO3C010062.2 Cucumis melo HOM05D003040 ORTHO05D003443 1.5e-08 62.8 62 50.0
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 1.5e-08 62.8 70 47.1
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 1.9e-08 62.4 65 49.2
CSS0003515 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 1.9e-08 62.4 55 58.2
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.9e-08 62.4 63 50.8
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 1.9e-08 62.4 69 42.0
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 1.9e-08 62.4 54 55.6
CsaV3_1G044570 Cucumis sativus L. HOM05D003040 ORTHO05D003443 2.5e-08 62.0 64 50.0
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 2.5e-08 62.0 70 48.6
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 3.3e-08 61.6 57 50.9
COL.COLO4_27384 Corchorus olitorius HOM05D003040 ORTHO05D003443 3.3e-08 61.6 65 46.2
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 3.3e-08 61.6 70 48.6
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 3.3e-08 61.6 53 56.6
Gohir.D04G025900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 4.3e-08 61.2 63 50.8
Gorai.012G028500 Gossypium raimondii HOM05D003040 ORTHO05D003443 4.3e-08 61.2 63 50.8
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 4.3e-08 61.2 57 56.1
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 4.3e-08 61.2 59 52.5
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 4.3e-08 61.2 62 50.0
HPP92_025248 Vanilla planifolia HOM05D003040 ORTHO05D003443 4.3e-08 61.2 76 39.5
AUR62000315 Chenopodium quinoa HOM05D000001 ORTHO05D010091 5.7e-08 60.8 56 53.6
Lsat_1_v5_gn_9_48880 Lactuca sativa HOM05D003040 ORTHO05D003443 7.4e-08 60.5 69 44.9
Lalb_Chr03g0038441 Lupinus albus HOM05D003040 ORTHO05D003443 7.4e-08 60.5 56 53.6
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 7.4e-08 60.5 52 55.8
VMungo1383G1123 Vigna mungo HOM05D003040 ORTHO05D003443 7.4e-08 60.5 58 48.3
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 9.7e-08 60.1 54 53.7
ClCG03G010790 Citrullus lanatus HOM05D003040 ORTHO05D003443 9.7e-08 60.1 62 50.0
Ah.06g195510 Amaranthus hybridus HOM05D000001 ORTHO05D010091 1.3e-07 59.7 56 51.8
HanXRQChr01g0021741 Helianthus annuus HOM05D003040 ORTHO05D003443 1.3e-07 59.7 64 50.0
PGSC0003DMG400016167 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.3e-07 59.7 64 43.8
Lsat_1_v5_gn_2_17620 Lactuca sativa HOM05D003040 ORTHO05D003443 1.7e-07 59.3 56 48.2
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 1.7e-07 59.3 50 56.0
Actinidia32963 Actinidia chinensis HOM05D003040 ORTHO05D003443 2.2e-07 58.9 49 59.2
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 2.2e-07 58.9 64 50.0
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 2.8e-07 58.5 57 47.4
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 2.8e-07 58.5 58 53.4
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 2.8e-07 58.5 58 55.2
Manes.13G005800 Manihot esculenta HOM05D003040 ORTHO05D003443 2.8e-07 58.5 51 58.8
THA.LOC104820915 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 2.8e-07 58.5 54 51.9
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 3.7e-07 58.2 53 54.7
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 3.7e-07 58.2 73 45.2
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 3.7e-07 58.2 54 61.1
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 3.7e-07 58.2 58 51.7
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 3.7e-07 58.2 55 49.1
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.7e-07 58.2 52 53.8
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.7e-07 58.2 52 53.8
Zm00001eb364700 Zea mays HOM05D003040 ORTHO05D003443 3.7e-07 58.2 57 50.9
ECA238G0291 Erigeron canadensis HOM05D003040 ORTHO05D003443 4.8e-07 57.8 58 51.7
Lsat_1_v5_gn_1_69541 Lactuca sativa HOM05D003040 ORTHO05D003443 4.8e-07 57.8 58 48.3
Medtr7g079870 Medicago truncatula HOM05D003040 ORTHO05D003443 6.3e-07 57.4 49 49.0
Peaxi162Scf00048g00136 Petunia axillaris HOM05D003040 ORTHO05D003443 6.3e-07 57.4 50 54.0
Sed0008495 Sechium edule HOM05D003040 ORTHO05D003443 6.3e-07 57.4 67 46.3
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 8.2e-07 57.0 61 49.2
Cfa006269 Carpinus fangiana HOM05D003040 ORTHO05D003443 8.2e-07 57.0 69 44.9
ECA232G2830 Erigeron canadensis HOM05D003040 ORTHO05D003443 8.2e-07 57.0 50 52.0
Glyma.09G250900 Glycine max HOM05D003040 ORTHO05D003443 8.2e-07 57.0 56 46.4
Ca_07978_v3 Cicer arietinum L. HOM05D003040 ORTHO05D003443 1.1e-06 56.6 48 52.1
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.4e-06 56.2 63 46.0
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 1.4e-06 56.2 51 49.0
arahy.Tifrunner.gnm1.ann1.UTHB0M Arachis hypogaea HOM05D003040 ORTHO05D003443 1.8e-06 55.8 59 44.1
arahy.Tifrunner.gnm1.ann1.XQNQ91 Arachis hypogaea HOM05D003040 ORTHO05D003443 1.8e-06 55.8 59 44.1
EL10Ac4g09973 Beta vulgaris HOM05D003040 ORTHO05D003443 1.8e-06 55.8 51 52.9
BraA02t05329Z Brassica rapa HOM05D003040 ORTHO05D003443 1.8e-06 55.8 55 49.1
CDE02G1976 Ceratophyllum demersum HOM05D003040 ORTHO05D003443 1.8e-06 55.8 60 45.0
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 1.8e-06 55.8 73 43.8
Nitab4.5_0001308g0120 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.8e-06 55.8 49 49.0
Os11g0472600 Oryza sativa ssp. japonica HOM05D003040 ORTHO05D003443 1.8e-06 55.8 52 50.0
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.8e-06 55.8 56 46.4
HanXRQChr14g0431461 Helianthus annuus HOM05D003040 ORTHO05D003443 2.4e-06 55.5 62 40.3
Nitab4.5_0002233g0050 Nicotiana tabacum HOM05D003040 ORTHO05D003443 2.4e-06 55.5 49 49.0
Solyc11g008880.2 Solanum lycopersicum HOM05D003040 ORTHO05D003443 2.4e-06 55.5 65 43.1
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 3.1e-06 55.1 71 42.3
Sopen11g004660 Solanum pennellii HOM05D003040 ORTHO05D003443 3.1e-06 55.1 46 52.2
HPP92_009970 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.1e-06 55.1 56 48.2
Zm00001eb143410 Zea mays HOM05D003040 ORTHO05D000873 3.1e-06 55.1 57 45.6
AL6G27430 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 4.1e-06 54.7 55 52.7
Carub.0006s1469 Capsella rubella HOM05D003040 ORTHO05D003443 5.3e-06 54.3 61 49.2
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 5.3e-06 54.3 62 46.8
Glyma.20G219000 Glycine max HOM05D003040 ORTHO05D003443 5.3e-06 54.3 55 47.3
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 6.9e-06 53.9 55 50.9
SalBow6G3188 Salvia bowleyana HOM05D003040 ORTHO05D003443 6.9e-06 53.9 45 51.1
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 9.1e-06 53.5 54 55.6


User provided reference genes

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