Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.5e-153 546.2 285 100.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.5e-150 536.2 285 97.5
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.1e-143 510.4 285 90.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.2e-141 505.8 285 89.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.2e-141 505.8 285 89.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.2e-141 505.8 285 89.5
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.8e-141 505.0 285 89.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-141 505.0 285 89.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.8e-141 505.0 285 89.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 5.0e-141 504.6 285 89.8
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 8.5e-141 503.8 277 93.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-140 502.7 285 89.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.5e-140 501.1 285 90.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-138 496.9 285 89.1
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.4e-138 496.5 285 87.7
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-138 495.0 285 88.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.8e-135 486.1 285 86.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 6.5e-133 477.6 284 86.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.8e-122 443.0 286 78.7
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.0e-106 390.6 285 72.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 3.4e-105 385.6 285 71.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.4e-105 385.2 285 72.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.7e-104 383.3 285 71.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.4e-104 381.3 251 78.9
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.3e-104 380.9 285 71.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.1e-103 380.6 285 70.5
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.4e-103 379.4 282 69.1
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.7e-101 373.2 289 66.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 3.9e-101 372.1 281 68.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 3.9e-101 372.1 282 67.7
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 3.9e-101 372.1 280 68.9
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 5.0e-101 371.7 280 68.9
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.3e-100 369.0 280 68.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 4.3e-100 368.6 276 70.7
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.5e-100 367.5 282 67.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.2e-99 367.1 286 65.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.6e-99 366.7 284 66.2
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.1e-99 366.3 284 67.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.6e-99 365.5 284 67.3
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.6e-99 365.5 285 66.7
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 4.7e-99 365.2 257 72.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.1e-98 362.5 286 67.1
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.0e-98 362.1 283 68.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.0e-98 362.1 286 66.4
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.6e-97 359.4 285 68.1
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.4e-97 358.6 287 66.2
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 7.5e-97 357.8 285 66.7
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 7.5e-97 357.8 284 65.1
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 7.5e-97 357.8 285 65.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.3e-96 357.1 284 64.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-96 356.7 285 65.6
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.7e-96 356.7 282 67.7
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 6.4e-96 354.8 284 64.8
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 8.3e-96 354.4 278 66.9
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 8.3e-96 354.4 286 67.1
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 8.3e-96 354.4 284 65.5
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.4e-95 353.6 287 64.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.4e-95 353.6 285 64.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.9e-95 353.2 279 65.2
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.2e-95 352.4 285 64.6
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.2e-95 352.4 290 65.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.1e-95 352.1 284 66.2
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.1e-95 352.1 283 65.4
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.4e-95 351.7 279 67.4
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.5
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 65.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.6e-94 350.1 280 65.4
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.1e-94 349.7 245 72.2
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.6e-94 348.6 287 63.8
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.0e-93 347.4 293 62.8
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 277 65.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.0e-93 347.4 284 66.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.7e-93 346.7 278 64.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.7e-93 346.7 288 65.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.3e-93 346.3 293 61.1
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.9e-93 345.5 287 63.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.0e-93 345.1 284 64.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 5.0e-93 345.1 293 63.1
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.0e-93 345.1 280 63.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 8.6e-93 344.4 285 64.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.6e-93 344.4 289 65.1
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.5e-92 343.6 244 72.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.5e-92 343.6 287 65.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-92 343.2 271 66.8
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.6e-92 341.7 271 67.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.3e-92 341.3 227 75.8
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.6e-91 340.1 286 66.1
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.6e-91 339.0 286 64.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 8.1e-91 337.8 285 63.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.1e-90 335.9 296 62.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 4.0e-90 335.5 321 58.3
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.8e-90 334.7 243 70.4
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.4e-89 332.0 226 71.7
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.8e-89 331.6 226 71.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 7.5e-89 331.3 285 63.2
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 7.5e-89 331.3 277 63.2
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.7e-88 328.9 278 63.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.9e-88 328.6 283 61.8
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-87 327.0 278 63.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 3.2e-87 325.9 280 65.0
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.2e-86 323.9 281 60.9
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.7e-86 322.8 216 74.1
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.7e-86 322.8 246 67.5
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.1e-85 318.5 291 60.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.1e-84 317.4 283 59.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.3e-84 315.8 285 59.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 5.6e-84 315.1 253 64.8
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.6e-83 313.5 279 61.6
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.8e-82 310.1 282 60.6
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.9e-82 307.8 283 60.4
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.4e-80 301.6 228 67.5
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.3e-77 293.9 283 56.9
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.3e-77 293.9 241 63.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.9e-76 290.0 229 62.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 8.1e-75 284.6 234 63.2
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.8e-74 283.5 234 63.2
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 9.0e-74 281.2 287 56.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 4.9e-72 275.4 215 67.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.0e-69 266.2 300 48.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.5e-68 263.1 262 53.1
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 5.6e-68 261.9 237 57.4
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.8e-67 259.6 289 49.8
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.3e-60 235.7 197 55.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.7e-59 232.6 197 54.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.8e-59 232.3 197 54.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-58 231.1 197 54.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-56 223.4 210 58.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.3e-52 209.5 270 47.4
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.9e-50 201.8 150 66.0
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-48 197.6 137 73.0
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.9e-48 195.7 154 65.6
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.4e-48 194.9 211 54.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.9e-47 193.7 197 47.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.5e-47 193.4 246 49.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.9e-45 186.0 224 50.0
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-37 161.4 171 52.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-35 153.7 178 46.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 4.8e-35 152.5 100 77.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 4.8e-35 152.5 100 77.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.4e-31 138.3 182 39.6
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.1e-29 132.5 118 59.3
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.0e-28 130.6 90 74.4
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-27 127.1 199 35.2
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.7e-24 117.5 76 73.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.1e-23 114.8 192 36.5
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-23 114.0 206 39.8
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 7.2e-23 112.1 217 32.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-22 109.0 190 41.1
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.1e-18 96.7 67 67.2
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 7.0e-18 95.5 51 86.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 60 70.0
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-17 93.2 60 70.0
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 7.7e-17 92.0 91 48.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 60 68.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.6e-14 83.2 66 62.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.4e-13 81.3 92 50.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 5.2e-13 79.3 59 71.2
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 5.2e-13 79.3 59 71.2
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 5.7e-12 75.9 61 65.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-12 75.5 53 66.0
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 1.0e-08 65.1 44 72.7
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 2.9e-08 63.5 46 67.4


User provided reference genes

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