Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.8e-72 275.8 135 100.0
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.1e-69 264.6 135 96.3
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.7e-67 259.2 134 93.3
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 5.6e-66 254.2 135 90.4
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 2.2e-62 242.3 136 86.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 2.2e-62 242.3 136 86.8
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 4.9e-62 241.1 134 84.3
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.1e-61 240.0 138 84.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-61 239.6 134 83.6
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.8e-61 239.2 138 84.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 5.4e-61 237.7 136 85.3
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 3.5e-60 235.0 136 82.4
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.0e-59 233.4 136 81.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.0e-59 231.9 136 80.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.6e-59 230.3 136 80.1
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 4.3e-58 228.0 136 80.1
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.7e-57 224.6 134 79.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.3e-51 205.7 134 74.6
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.1e-49 199.1 129 72.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.8e-48 194.1 114 84.2
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.4e-47 191.4 130 72.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.2e-46 189.1 135 71.1
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.1e-42 176.8 134 66.4
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.1e-40 170.2 135 65.2
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 5.2e-40 167.9 130 63.1
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.2e-39 166.8 131 61.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.4e-39 165.2 135 61.5
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.4e-39 165.2 134 59.7
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 4.4e-39 164.9 131 62.6
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 6.4e-38 161.0 134 63.4
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.1e-37 160.2 131 61.8
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.4e-37 159.1 110 67.3
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.2e-37 158.7 131 61.8
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 7.1e-37 157.5 135 59.3
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.5e-36 155.2 124 61.3
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.5e-36 155.2 134 58.2
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.3e-35 152.5 111 63.1
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.0e-35 152.1 113 61.9
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 8.6e-35 150.6 131 58.0
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 8.6e-35 150.6 134 56.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.6e-35 150.6 134 56.0
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.5e-34 149.8 137 59.9
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-34 149.4 130 58.5
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.5e-34 149.1 111 62.2
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 5.6e-34 147.9 133 57.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-33 146.7 134 55.2
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.1e-33 146.0 143 55.9
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.6e-33 145.2 132 58.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.7e-33 144.8 135 55.6
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.7e-33 144.8 135 55.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.7e-33 144.8 134 54.5
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 6.2e-33 144.4 136 56.6
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.1e-32 143.7 111 61.3
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.2e-32 141.4 138 55.8
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.2e-32 141.4 122 60.7
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-31 139.8 126 57.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.6e-31 139.0 136 55.9
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.4e-31 138.7 136 55.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 5.8e-31 137.9 129 58.1
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-30 136.7 117 60.7
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-30 136.7 132 53.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.3e-30 136.7 115 60.9
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.7e-30 136.3 130 56.2
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-30 135.2 136 57.4
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.9e-30 134.8 136 55.9
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 6.4e-30 134.4 129 51.9
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 8.4e-30 134.0 129 55.8
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 8.4e-30 134.0 136 55.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.1e-29 133.7 134 56.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-29 133.7 123 58.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.9e-29 132.9 134 55.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.9e-29 132.9 91 69.2
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.2e-29 132.1 104 60.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 7.1e-29 131.0 132 50.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 7.1e-29 131.0 134 50.7
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 9.3e-29 130.6 137 51.1
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.6e-28 129.8 130 53.8
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.1e-28 129.4 110 59.1
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.7e-28 129.0 136 50.7
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 7.8e-28 127.5 136 51.5
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.3e-27 126.7 104 60.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.7e-27 126.3 116 57.8
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 2.3e-27 125.9 129 50.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 6.6e-27 124.4 108 60.2
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.7e-27 124.0 133 49.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-26 123.6 108 60.2
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.9e-26 122.9 85 68.2
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.5e-26 122.5 87 65.5
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.3e-26 122.1 129 51.9
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.3e-26 122.1 104 58.7
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 3.3e-26 122.1 131 47.3
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 4.3e-26 121.7 120 56.7
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 7.3e-26 120.9 95 64.2
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.3e-26 120.9 128 50.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 9.6e-26 120.6 128 47.7
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.6e-25 119.8 117 55.6
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 134 50.7
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 134 50.7
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.6e-25 118.6 113 53.1
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 6.2e-25 117.9 111 51.4
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 114 54.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.4e-24 116.7 181 41.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.4e-24 116.7 103 59.2
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.4e-24 116.7 97 56.7
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.4e-24 116.7 114 54.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.8e-24 116.3 89 62.9
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.8e-24 116.3 96 56.2
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.1e-24 115.5 105 54.3
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.9e-24 114.4 57 89.5
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.5e-23 113.2 130 49.2
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.5e-23 113.2 129 48.1
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.5e-23 113.2 74 68.9
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.6e-23 112.5 112 54.5
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.6e-23 112.5 117 51.3
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.4e-23 112.1 64 76.6
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 9.9e-23 110.5 64 78.1
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.3e-22 110.2 96 54.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.7e-22 109.8 113 55.8
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.7e-22 109.8 93 57.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.1e-21 107.1 62 71.0
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.1e-21 107.1 64 71.9
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.4e-21 105.9 111 48.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.4e-21 105.9 57 78.9
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.2e-21 105.1 135 45.9
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.5e-20 102.1 163 40.5
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.0e-19 100.5 74 66.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.9e-19 98.6 114 50.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.9e-19 98.6 114 50.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.5e-18 95.9 58 70.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 5.6e-18 94.7 48 85.4
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.4e-18 94.4 119 44.5
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.6e-17 93.2 113 47.8
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 8.1e-17 90.9 114 50.9
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 8.1e-17 90.9 114 51.8
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.9e-14 82.4 121 43.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 6.4e-14 81.3 54 59.3
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.4e-13 80.1 53 60.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.9e-13 79.7 50 62.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.2e-13 78.6 96 47.9
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 9.3e-13 77.4 49 67.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.6e-12 75.1 103 45.6
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.8e-11 73.2 48 70.8
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.8e-11 73.2 128 39.1
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.5e-10 70.1 38 78.9
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 9.6e-10 67.4 38 78.9
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.2e-09 64.7 81 45.7
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 1.7e-06 56.6 65 41.5
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.2e-06 56.2 37 70.3
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 4.9e-06 55.1 60 38.3


User provided reference genes

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