Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 3.3e-63 245.0 134 100.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 7.0e-61 237.3 134 97.0
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 4.2e-58 228.0 134 88.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 5.5e-58 227.6 134 94.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 2.7e-57 225.3 134 87.3
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.6e-57 224.9 134 86.6
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 3.7e-54 214.9 134 83.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-53 212.6 147 78.9
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.4e-53 212.2 137 87.6
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-53 211.8 140 81.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 9.1e-53 210.3 143 86.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 9.1e-53 210.3 141 85.8
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.6e-52 209.5 113 94.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.0e-51 206.8 147 81.0
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.8e-51 204.9 140 79.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 4.2e-50 201.4 137 82.5
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 4.7e-49 198.0 126 81.0
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 4.7e-49 198.0 116 84.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 6.1e-49 197.6 128 77.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.1e-49 197.6 114 86.8
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.4e-48 196.4 114 86.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.3e-48 195.7 114 86.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.0e-48 195.3 116 84.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.2e-47 193.4 115 83.5
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.2e-47 193.4 124 79.0
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.4e-47 191.4 114 79.8
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 9.8e-47 190.3 116 83.6
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 9.8e-47 190.3 126 74.6
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.3e-46 189.9 114 82.5
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.3e-46 189.9 114 82.5
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.3e-46 189.9 114 82.5
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.3e-46 189.9 116 81.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.7e-46 189.5 126 77.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.7e-46 188.3 124 77.4
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 3.7e-46 188.3 128 74.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 3.7e-46 188.3 114 80.7
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.9e-46 188.0 121 80.2
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 8.3e-46 187.2 114 78.9
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.4e-45 186.4 114 78.1
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 3.1e-45 185.3 128 75.0
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 5.4e-45 184.5 126 74.6
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 7.0e-45 184.1 116 79.3
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 7.0e-45 184.1 128 72.7
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 9.1e-45 183.7 116 79.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.1e-45 183.7 126 74.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.2e-44 183.3 128 74.2
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.2e-44 183.3 116 81.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.6e-44 183.0 116 75.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.0e-44 182.6 124 72.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.0e-44 182.6 114 77.2
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.7e-44 180.6 150 65.3
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.7e-44 180.6 150 65.3
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.3e-43 179.9 115 78.3
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 2.9e-43 178.7 133 71.4
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 2.9e-43 178.7 116 78.4
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 3.8e-43 178.3 128 74.2
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.8e-43 178.3 114 76.3
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.1e-42 176.8 114 77.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.1e-42 176.8 116 77.6
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.5e-42 176.4 114 78.9
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.9e-42 176.0 141 68.1
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.9e-42 176.0 141 68.1
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 2.5e-42 175.6 116 77.6
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 3.3e-42 175.3 116 76.7
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.2e-42 174.9 116 78.4
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 9.5e-42 173.7 114 78.9
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.2e-41 173.3 126 73.0
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.6e-41 172.9 116 75.9
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.8e-41 172.2 138 75.4
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.8e-41 172.2 113 77.0
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 8.0e-41 170.6 131 71.0
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.4e-40 169.9 114 75.4
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.8e-40 169.5 114 71.9
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.8e-40 169.5 126 69.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 5.2e-40 167.9 127 67.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 5.2e-40 167.9 114 73.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.2e-40 167.9 116 76.7
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.2e-40 167.9 126 69.0
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 6.8e-40 167.5 116 71.6
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 3.4e-39 165.2 117 72.6
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 4.4e-39 164.9 112 78.6
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 5.7e-39 164.5 113 71.7
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.3e-38 163.3 114 71.1
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.7e-38 162.9 112 77.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.9e-38 162.2 114 70.2
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.4e-38 161.0 114 69.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 8.3e-38 160.6 115 67.8
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.4e-37 159.8 114 68.4
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.4e-37 159.8 116 69.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 5.4e-37 157.9 115 67.8
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 5.4e-37 157.9 116 69.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.4e-37 157.9 150 57.3
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.2e-37 157.1 114 73.7
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 4.6e-36 154.8 100 81.0
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.8e-36 154.1 114 72.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 3.9e-35 151.8 107 70.1
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 6.6e-35 151.0 116 72.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 6.6e-35 151.0 116 68.1
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-34 149.4 171 50.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.6e-34 147.9 113 68.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.5e-34 147.1 107 72.9
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.2e-33 146.7 129 62.8
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.1e-33 146.0 128 57.8
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.8e-33 145.6 92 75.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 5.2e-32 141.4 90 76.7
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.0e-31 139.4 115 64.3
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.4e-31 138.7 114 66.7
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.4e-31 138.3 133 58.6
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.4e-31 138.3 115 64.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.3e-30 136.7 88 73.9
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 2.9e-30 135.6 116 62.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.2e-29 132.1 85 76.5
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.6e-28 129.8 106 60.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.5e-28 128.6 101 64.4
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 7.8e-28 127.5 118 60.2
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.5e-26 123.2 106 58.5
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.5e-26 122.5 105 56.2
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 7.3e-26 120.9 84 71.4
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 8.1e-25 117.5 83 74.7
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.4e-24 116.7 70 80.0
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.4e-23 112.1 92 65.2
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 4.4e-23 111.7 69 76.8
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 9.8e-23 110.5 70 74.3
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.3e-22 110.2 171 40.9
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 5.6e-18 94.7 83 65.1
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 1.4e-16 90.1 49 89.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 3.1e-16 89.0 60 68.3
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 4.1e-13 78.6 66 51.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 9.6e-10 67.4 48 66.7
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.6e-09 65.5 47 72.3
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-08 63.9 63 58.7


User provided reference genes

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