Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 4.6e-91 337.8 163 100.0
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 3.3e-57 225.3 119 89.9
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.2e-51 206.8 117 86.3
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.2e-48 196.1 118 80.5
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 3.7e-48 195.3 119 79.8
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-45 186.8 119 77.3
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 3.8e-45 185.3 119 76.5
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-44 183.7 119 77.3
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 1.1e-44 183.7 119 77.3
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.1e-44 183.7 118 78.8
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 2.5e-44 182.6 119 75.6
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.6e-43 179.9 121 76.9
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.0e-42 177.2 113 77.9
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-42 176.4 119 76.5
BolC5t31202H Brassica oleracea HOM05D000085 ORTHO05D000274 1.0e-29 134.0 94 70.2
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 5.0e-29 131.7 125 56.0
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 3.3e-28 129.0 117 59.0
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 7.2e-28 127.9 127 54.3
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 9.5e-28 127.5 125 55.2
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 6.1e-27 124.8 122 55.7
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-26 123.2 124 54.8
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 4.0e-26 122.1 122 55.7
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 5.2e-26 121.7 122 55.7
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.5e-25 120.2 125 52.0
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 2.0e-25 119.8 110 60.0
BcaC05g26644 Brassica carinata HOM05D007408 ORTHO05D009325 2.8e-24 115.9 86 70.9
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 1.8e-23 113.2 130 48.5
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.4e-23 112.8 130 47.7
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.4e-23 112.8 130 47.7
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 3.5e-22 109.0 131 45.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 3.5e-22 109.0 131 45.8
BraA09t39474Z Brassica rapa HOM05D000085 ORTHO05D000274 6.6e-21 104.8 86 61.6
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 4.7e-19 98.6 113 51.3
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.0e-18 97.4 109 49.5
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 1.7e-16 90.1 116 44.8
Thhalv10019756m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.7e-16 89.0 69 62.3
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 4.9e-16 88.6 119 41.2
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 6.4e-16 88.2 112 40.2
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 5.4e-15 85.1 116 38.8
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 7.0e-15 84.7 136 37.5
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 7.0e-15 84.7 113 39.8
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 9.2e-15 84.3 121 37.2
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-15 84.3 113 39.8
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-15 84.3 113 39.8
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.2e-15 84.3 113 39.8
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.2e-14 84.0 117 40.2
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.6e-14 83.6 117 37.6
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 3.5e-14 82.4 115 43.5
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 3.5e-14 82.4 115 43.5
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 3.5e-14 82.4 115 43.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 3.5e-14 82.4 121 39.7
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 6.0e-14 81.6 119 42.0
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 6.0e-14 81.6 116 40.5
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 6.0e-14 81.6 133 39.1
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-13 80.5 115 41.7
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.3e-13 80.5 115 41.7
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 1.7e-13 80.1 115 40.9
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.3e-13 79.7 116 41.4
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 3.0e-13 79.3 117 38.5
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 3.9e-13 79.0 117 41.0
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 3.9e-13 79.0 126 34.9
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.0e-13 78.6 115 40.9
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 6.6e-13 78.2 111 35.1
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.1e-12 77.4 130 35.4
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 1.5e-12 77.0 114 37.7
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 1.5e-12 77.0 116 38.8
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-12 76.6 115 38.3
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-12 76.6 115 40.9
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 1.9e-12 76.6 115 38.3
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.9e-12 76.6 128 34.4
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.9e-12 76.6 128 34.4
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 3.3e-12 75.9 115 40.0
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 3.3e-12 75.9 115 38.3
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.3e-12 75.9 121 36.4
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 7.3e-12 74.7 129 34.1
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.2e-11 73.9 118 35.6
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 2.1e-11 73.2 133 33.1
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 2.1e-11 73.2 117 36.8
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 2.8e-11 72.8 128 32.0
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.8e-11 72.8 121 32.2
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 3.6e-11 72.4 139 32.4
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 4.7e-11 72.0 131 32.1
BcaC03g17360 Brassica carinata HOM05D007408 ORTHO05D009325 8.0e-11 71.2 55 65.5
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.1e-10 70.9 149 28.2
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.1e-10 70.9 122 35.2
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.1e-10 70.9 111 36.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 1.4e-10 70.5 116 34.5
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.4e-10 70.5 125 30.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.8e-10 70.1 116 34.5
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.8e-10 70.1 116 34.5
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 2.3e-10 69.7 127 33.1
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 3.1e-10 69.3 124 33.1
BcaC08g45945 Brassica carinata HOM05D000085 ORTHO05D000274 4.0e-10 68.9 89 49.4
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 6.8e-10 68.2 119 30.3
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 6.8e-10 68.2 117 35.9
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 8.9e-10 67.8 144 28.5
BcaC08g45936 Brassica carinata HOM05D000085 ORTHO05D000274 2.6e-09 66.2 85 50.6
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 4.4e-09 65.5 110 31.8
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 7.5e-09 64.7 114 35.1
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 3.7e-08 62.4 127 33.9
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 4.9e-08 62.0 64 45.3
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 8.3e-08 61.2 118 33.9
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 1.4e-07 60.5 103 37.9
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 5.4e-07 58.5 109 30.3
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 7.1e-07 58.2 126 31.0
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 9.2e-07 57.8 119 30.3
Thhalv10019564m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.6e-06 57.0 54 53.7
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 2.7e-06 56.2 119 30.3
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 4.6e-06 55.5 62 43.5


User provided reference genes

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