Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.8e-35 152.5 108 100.0
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.1e-31 139.0 66 92.4
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 8.8e-30 133.7 112 87.5
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.4e-24 116.3 71 78.9
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 9.4e-24 113.6 63 82.5
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 2.7e-23 112.1 70 78.6
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 2.7e-23 112.1 70 78.6
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 2.7e-23 112.1 70 78.6
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 2.7e-23 112.1 70 78.6
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 2.7e-23 112.1 70 78.6
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 4.7e-23 111.3 58 84.5
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 6.1e-23 110.9 72 73.6
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 5.1e-22 107.8 58 82.8
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 5.1e-22 107.8 58 82.8
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 5.1e-22 107.8 58 82.8
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 5.1e-22 107.8 58 82.8
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 5.1e-22 107.8 58 82.8
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 6.1e-15 84.3 58 65.5
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 1.5e-13 79.7 56 64.3
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.3e-12 76.6 52 63.5
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 2.8e-12 75.5 52 63.5
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.4e-11 73.2 45 68.9
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.8e-11 72.8 48 64.6
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 3.1e-11 72.0 50 64.0
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 7.0e-11 70.9 50 62.0
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 7.0e-11 70.9 50 62.0
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 7.0e-11 70.9 50 62.0
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 7.0e-11 70.9 50 62.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.6e-10 69.7 50 60.0
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.6e-10 69.7 45 60.0
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 2.6e-10 68.9 50 60.0
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 2.6e-10 68.9 48 60.4
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 3.5e-10 68.6 47 63.8
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 4.5e-10 68.2 47 63.8
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 4.5e-10 68.2 47 63.8
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 4.5e-10 68.2 47 63.8
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 7.7e-10 67.4 45 57.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 7.7e-10 67.4 45 60.0
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 1.7e-09 66.2 45 62.2
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.7e-09 66.2 45 57.8
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 1.7e-09 66.2 58 51.7
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 1.7e-09 66.2 63 46.0
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 2.2e-09 65.9 43 58.1
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.8e-09 65.1 46 56.5
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.5e-08 63.2 41 58.5
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 1.5e-08 63.2 43 60.5
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.9e-08 62.8 43 55.8
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 2.5e-08 62.4 41 58.5
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 2.5e-08 62.4 46 54.3
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 3.2e-08 62.0 44 54.5
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.2e-08 62.0 41 58.5
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 4.2e-08 61.6 42 59.5
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 4.2e-08 61.6 46 52.2
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 5.5e-08 61.2 41 58.5
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 5.5e-08 61.2 45 55.6
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 7.2e-08 60.8 43 53.5
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 7.2e-08 60.8 44 56.8
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 9.4e-08 60.5 43 55.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 1.2e-07 60.1 54 46.3
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 1.2e-07 60.1 54 44.4
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 1.2e-07 60.1 46 56.5
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 1.6e-07 59.7 52 48.1
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.1e-07 59.3 44 54.5
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.1e-07 59.3 45 55.6
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 2.1e-07 59.3 42 59.5
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 2.1e-07 59.3 42 59.5
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 2.7e-07 58.9 44 54.5
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 6.1e-07 57.8 46 50.0
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 6.1e-07 57.8 43 51.2
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 8.0e-07 57.4 48 50.0
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.0e-06 57.0 48 47.9
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.0e-06 57.0 48 47.9
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.0e-06 57.0 48 47.9
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 1.0e-06 57.0 45 51.1
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.4e-06 56.6 45 48.9
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.4e-06 56.6 45 48.9
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 6.7e-06 54.3 48 45.8


User provided reference genes

Program Settings