Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 8.0e-155 550.4 289 100.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.4e-129 464.9 287 88.2
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.4e-114 416.8 296 79.7
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-100 370.5 293 73.4
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-99 365.9 294 71.8
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.2e-99 364.4 296 69.9
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-98 363.6 291 71.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.5e-96 354.8 295 69.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.5e-96 354.8 295 69.2
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.5e-96 354.8 295 69.2
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.3e-90 335.1 290 65.2
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.0e-84 316.6 294 66.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 6.3e-75 285.0 299 57.5
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.9e-72 276.2 294 57.5
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.9e-71 273.5 290 56.6
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.8e-69 264.6 301 53.8
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 9.7e-68 261.2 300 55.7
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 9.7e-68 261.2 300 55.7
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 8.2e-67 258.1 300 55.0
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 8.2e-67 258.1 300 55.0
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 3.5e-65 252.7 307 52.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-63 247.3 303 53.8
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.9e-63 246.9 297 54.2
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.2e-63 246.1 297 53.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 5.2e-61 238.8 300 51.7
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 6.8e-61 238.4 300 51.0
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-60 237.3 300 51.3
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.4e-60 235.7 296 51.4
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.7e-59 233.8 300 51.0
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.8e-59 232.3 300 50.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 7.0e-58 228.4 298 49.7
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 3.8e-56 222.6 280 51.1
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 9.2e-42 174.9 320 42.8
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.3e-40 170.2 328 38.1
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.3e-39 166.4 311 40.2
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.6e-39 165.6 309 39.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 9.5e-39 164.9 312 37.2
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.1e-38 163.7 313 37.7
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.8e-38 163.3 319 39.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.6e-38 162.9 313 37.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 6.1e-38 162.2 323 39.3
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 6.1e-38 162.2 306 39.5
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.0e-37 161.4 309 38.2
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 3.5e-33 146.4 321 38.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 8.6e-32 141.7 305 37.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.3e-31 138.7 292 39.0
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 7.3e-31 138.7 317 36.9
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.1e-30 137.1 306 36.6
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 8.0e-30 135.2 336 32.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 4.0e-29 132.9 295 34.9
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.2e-29 132.5 282 35.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.2e-28 131.3 280 34.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 7.5e-28 128.6 285 35.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.2e-27 127.1 304 33.6
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 8.3e-27 125.2 299 32.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.4e-26 123.6 320 34.1
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.4e-26 123.6 298 32.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.4e-26 122.5 315 33.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.4e-26 122.5 304 31.9
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.7e-25 120.2 295 33.6
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.5e-25 119.8 306 35.0
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.0e-25 119.0 308 34.1
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.7e-24 117.5 267 36.7
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.7e-24 117.5 295 32.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.0e-24 116.7 295 36.3
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.9e-24 116.3 295 36.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 5.1e-24 115.9 303 32.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.6e-24 115.5 309 33.7
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.3e-23 113.2 304 32.9
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 4.3e-23 112.8 308 34.1
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.3e-23 112.8 295 37.3
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.6e-23 112.5 286 36.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.6e-23 112.5 316 31.6
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 5.6e-23 112.5 291 35.1
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.1e-22 110.5 310 34.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.8e-22 110.2 316 34.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.8e-22 110.2 306 36.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.6e-22 109.8 315 31.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.6e-22 109.8 304 31.6
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 4.7e-22 109.4 313 28.8
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.7e-22 109.4 318 28.9
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 4.7e-22 109.4 305 34.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.7e-22 109.4 311 33.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.8e-21 107.5 335 29.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.8e-21 107.5 296 34.1
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.1e-21 106.7 316 32.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.1e-21 106.7 303 30.7
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 5.2e-21 105.9 318 33.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.9e-21 105.1 303 30.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.9e-21 105.1 274 32.8
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.2e-20 104.8 321 33.6
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.2e-20 104.8 273 31.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.5e-20 104.4 314 33.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.0e-20 104.0 320 30.0
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.0e-20 104.0 298 32.9
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.6e-20 103.6 316 32.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.6e-20 103.6 298 32.9
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.4e-20 103.2 293 32.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.4e-20 102.8 300 33.3
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 9.9e-20 101.7 301 30.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 9.9e-20 101.7 303 31.4
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.9e-19 100.1 311 33.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-18 98.2 308 33.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.1e-18 98.2 328 32.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-18 97.8 264 33.7
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-18 97.4 293 34.1
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.1e-18 96.3 309 33.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.1e-18 96.3 272 29.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 9.2e-18 95.1 301 31.9
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 2.7e-17 93.6 314 31.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.0e-16 91.7 308 31.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.7e-16 90.9 175 39.4
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 3.9e-16 89.7 317 32.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.1e-16 89.4 300 30.0
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 5.1e-16 89.4 292 32.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.9e-15 87.4 281 32.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 4.3e-15 86.3 332 29.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 4.3e-15 86.3 274 28.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 9.6e-15 85.1 325 30.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 9.6e-15 85.1 272 28.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 4.7e-14 82.8 229 31.4
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.8e-13 80.9 271 32.1
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-13 80.9 304 28.3
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 3.1e-13 80.1 297 30.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 5.2e-13 79.3 256 30.9
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.2e-13 79.3 166 34.9
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.5e-12 77.8 309 28.2
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.0e-12 77.4 310 28.7
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 3.4e-12 76.6 149 35.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.4e-12 76.6 156 34.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.4e-12 76.6 280 30.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.6e-12 75.5 270 30.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 9.9e-12 75.1 301 28.6
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.8e-11 73.2 298 32.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.4e-11 72.4 103 46.6
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 5.4e-10 69.3 259 33.2
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.3e-10 68.6 149 32.9
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.5e-09 66.6 217 30.9
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.5e-09 66.6 243 31.3
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.6e-09 66.2 155 34.2
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.7e-08 64.3 182 31.9
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.3e-08 63.9 247 31.2
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.3e-08 63.9 241 31.1
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.5e-07 61.2 137 30.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.3e-07 60.1 68 45.6


User provided reference genes

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