Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.9e-102 374.8 189 100.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.5e-98 361.3 190 96.8
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.2e-94 347.8 192 93.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.3e-93 345.1 185 93.5
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 5.9e-90 334.3 190 88.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 6.1e-87 324.3 190 88.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.8e-86 322.8 192 87.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.3e-86 322.4 193 87.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.0e-86 321.6 189 88.4
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.2e-86 321.2 190 87.4
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.2e-86 321.2 190 87.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-85 320.1 189 88.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.4e-85 318.2 193 86.5
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 8.6e-81 303.9 180 87.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 9.5e-80 300.4 180 86.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.5e-77 290.8 188 78.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.8e-76 288.9 188 76.6
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.3e-68 260.8 152 89.5
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-64 250.4 191 74.3
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 4.9e-60 235.0 179 71.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.3e-56 221.9 123 92.7
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.9e-51 206.5 189 58.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.1e-51 205.3 190 57.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.1e-51 205.3 191 58.6
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.1e-50 203.0 173 59.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.5e-50 202.2 177 57.6
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 6.0e-50 201.4 172 59.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.0e-49 199.1 193 58.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.0e-49 199.1 180 56.7
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.1e-49 198.4 173 56.1
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.6e-49 197.6 172 57.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.1e-48 197.2 174 59.2
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.9e-48 196.4 171 58.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 3.3e-48 195.7 183 57.4
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.3e-48 195.7 182 56.0
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.3e-48 195.3 163 61.3
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 4.3e-48 195.3 169 57.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.3e-48 195.3 170 57.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 7.3e-48 194.5 172 57.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.8e-47 192.6 190 54.2
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.7e-47 191.8 172 56.4
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 6.2e-47 191.4 173 56.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.1e-46 190.7 172 56.4
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.4e-46 190.3 171 56.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.4e-46 190.3 180 54.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-46 190.3 174 55.2
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.8e-46 189.9 171 57.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.8e-46 189.9 175 56.6
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.8e-46 189.9 173 55.5
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.4e-46 189.5 171 57.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.4e-46 189.5 164 59.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 4.0e-46 188.7 170 53.5
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 5.2e-46 188.3 176 55.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.8e-46 188.0 168 57.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 8.9e-46 187.6 167 56.9
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.2e-45 187.2 176 54.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.0e-45 186.4 168 54.2
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.0e-45 186.4 172 55.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.0e-45 186.4 188 55.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.0e-45 186.4 188 52.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.0e-45 186.4 169 55.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.6e-45 186.0 174 54.0
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.4e-45 185.7 171 55.0
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 3.4e-45 185.7 175 55.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.4e-45 185.7 172 55.2
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.8e-45 184.9 172 55.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 7.6e-45 184.5 169 54.4
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.6e-45 184.5 174 54.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 7.6e-45 184.5 169 54.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 9.9e-45 184.1 181 54.1
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 9.9e-45 184.1 164 57.3
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 9.9e-45 184.1 169 54.4
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.3e-44 183.7 173 53.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.3e-44 183.7 169 55.6
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.7e-44 183.3 176 54.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.7e-44 183.3 169 53.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.2e-44 183.0 172 54.1
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.2e-44 183.0 171 52.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.8e-44 182.2 162 58.6
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.8e-44 182.2 185 54.1
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 6.4e-44 181.4 172 54.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-43 180.6 178 52.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-43 179.5 168 53.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.2e-43 178.7 183 55.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 7.1e-43 177.9 175 53.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 2.7e-42 176.0 187 54.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.5e-42 175.6 169 52.7
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.5e-42 175.6 161 54.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.0e-42 174.9 183 54.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 7.8e-42 174.5 169 52.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.7e-41 173.3 183 53.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 3.0e-41 172.6 187 53.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.0e-41 172.6 171 55.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.9e-41 172.2 204 49.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.9e-41 172.2 183 53.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.9e-41 172.2 199 48.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 5.1e-41 171.8 191 52.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 6.6e-41 171.4 187 52.9
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-40 169.9 159 52.8
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.6e-40 168.3 209 45.0
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.4e-38 163.7 235 42.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.4e-38 163.7 125 64.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.0e-38 162.2 186 47.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.4e-37 159.1 147 55.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.4e-37 159.1 169 50.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 7.6e-37 157.9 125 64.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.7e-36 156.8 125 63.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.1e-35 154.1 175 50.3
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.9e-35 153.3 144 56.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.2e-35 152.1 184 46.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 5.4e-35 151.8 191 46.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 7.1e-35 151.4 168 50.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.2e-34 150.6 173 49.1
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.7e-34 149.4 184 46.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.6e-34 148.7 184 46.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 4.6e-34 148.7 109 68.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.0e-34 148.3 172 44.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-33 146.7 176 48.3
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.0e-33 146.0 122 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.1e-30 136.0 158 43.7
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 4.0e-30 135.6 141 50.4
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.1e-27 127.5 186 41.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.4e-27 126.3 122 52.5
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-25 120.6 131 51.9
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-25 119.8 131 50.4
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.3e-25 119.8 124 50.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 8.7e-25 117.9 157 43.9
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.5e-24 117.1 157 44.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.3e-23 114.0 118 50.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-23 113.2 124 47.6
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 6.2e-23 111.7 122 50.0
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-22 110.9 133 43.6
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.2e-21 107.5 178 37.1
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.3e-20 104.0 156 43.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.2e-18 97.4 174 37.9
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.3e-17 93.2 139 38.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.1e-16 90.9 83 57.8
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.2e-11 72.8 50 68.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.1e-11 71.6 54 63.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-10 70.9 60 56.7
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.1e-10 70.1 50 66.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.1e-10 68.6 60 55.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 6.1e-10 68.6 72 44.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-09 67.4 124 36.3
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-09 67.0 53 60.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 8.2e-07 58.2 41 63.4


User provided reference genes

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