Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 4.2e-81 304.7 160 100.0
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 9.5e-73 276.9 166 88.0
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.9e-68 262.7 167 83.2
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.5e-65 253.1 165 80.6
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.5e-65 252.3 168 81.0
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.4e-62 241.5 169 77.5
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-59 233.0 154 79.9
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 3.5e-59 231.9 154 79.2
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 5.1e-58 228.0 155 77.4
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 5.1e-58 228.0 154 77.9
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 1.1e-57 226.9 164 76.8
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 1.1e-57 226.9 164 76.8
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 1.1e-57 226.9 164 76.8
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 5.6e-57 224.6 164 76.8
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 7.3e-57 224.2 164 75.6
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 2.3e-55 219.2 151 79.5
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 2.3e-55 219.2 151 79.5
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 5.2e-55 218.0 151 78.8
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 5.2e-55 218.0 151 78.8
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 8.9e-55 217.2 160 68.8
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 9.9e-54 213.8 151 78.1
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 2.9e-45 185.7 134 76.1
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 3.8e-45 185.3 134 76.1
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 3.0e-42 175.6 154 59.7
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 5.1e-42 174.9 158 60.1
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.1e-41 173.7 158 59.5
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 4.3e-41 171.8 169 57.4
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 5.6e-41 171.4 167 56.9
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 6.2e-40 167.9 168 54.2
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 6.2e-40 167.9 168 54.2
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 6.2e-40 167.9 168 54.2
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-39 167.2 167 55.1
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.4e-39 166.0 161 57.8
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 3.1e-39 165.6 167 54.5
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 6.2e-32 141.4 149 51.0
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.4e-31 140.2 162 50.0
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 1.9e-28 129.8 96 75.0
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 4.2e-28 128.6 96 75.0
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.3e-25 118.6 151 45.7
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.2e-22 110.5 145 41.4
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.2e-21 106.3 159 37.1
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 4.9e-21 105.1 106 50.0
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 8.4e-21 104.4 145 39.3
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 8.4e-21 104.4 134 41.0
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.5e-20 102.8 146 41.1
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 5.5e-20 101.7 160 38.1
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.7e-19 99.4 150 42.7
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 3.9e-18 95.5 130 40.8
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.1e-17 94.0 157 36.3
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.9e-17 93.2 153 39.2
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 3.3e-17 92.4 155 40.0
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 7.4e-17 91.3 151 36.4
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 9.6e-17 90.9 161 34.8
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.8e-16 89.4 152 40.1
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.8e-16 89.4 152 40.1
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 2.8e-16 89.4 160 35.0
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 8.2e-16 87.8 154 35.7
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 1.1e-15 87.4 154 37.0
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 5.3e-15 85.1 150 34.7
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 9.0e-15 84.3 149 36.2
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 3.4e-14 82.4 152 32.2
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 7.6e-14 81.3 148 37.2
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 1.7e-13 80.1 150 34.7
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 1.7e-13 80.1 148 34.5
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 2.2e-13 79.7 148 35.8
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.2e-13 79.7 130 32.3
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 2.9e-13 79.3 171 34.5
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 3.8e-13 79.0 152 33.6
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 4.9e-13 78.6 152 30.9
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 4.9e-13 78.6 143 35.7
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 6.5e-13 78.2 136 35.3
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 6.5e-13 78.2 153 32.7
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 6.5e-13 78.2 146 32.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 8.4e-13 77.8 144 34.0
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 8.4e-13 77.8 153 32.7
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 8.4e-13 77.8 149 32.2
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 8.4e-13 77.8 159 34.0
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 1.1e-12 77.4 153 32.7
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 1.1e-12 77.4 153 32.7
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.1e-12 77.4 164 31.7
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.4e-12 77.0 144 35.4
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 1.4e-12 77.0 153 32.0
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.4e-12 77.0 136 34.6
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.4e-12 77.0 136 34.6
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.4e-12 77.0 150 31.3
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 1.9e-12 76.6 164 36.0
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.9e-12 76.6 152 32.2
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 5.5e-12 75.1 151 31.1
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 7.1e-12 74.7 148 29.1
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 7.1e-12 74.7 144 33.3
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 7.1e-12 74.7 144 33.3
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 7.1e-12 74.7 152 30.3
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 9.3e-12 74.3 152 31.6
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 9.3e-12 74.3 158 32.3
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 9.3e-12 74.3 151 33.1
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.2e-11 73.9 148 35.8
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 1.2e-11 73.9 157 30.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 1.6e-11 73.6 144 32.6
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 2.1e-11 73.2 152 30.3
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 2.7e-11 72.8 145 35.9
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 3.5e-11 72.4 158 31.6
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 3.5e-11 72.4 149 30.2
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 3.5e-11 72.4 149 30.2
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.5e-11 72.4 157 31.8
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.0e-10 70.9 145 33.8
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.0e-10 70.9 143 32.9
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.3e-10 70.5 143 32.9
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 1.8e-10 70.1 172 31.4
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 3.0e-10 69.3 144 31.9
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 5.1e-10 68.6 149 29.5
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 5.1e-10 68.6 149 29.5
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.1e-09 67.4 154 31.2
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 2.5e-09 66.2 158 29.7
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 5.7e-09 65.1 141 28.4
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 5.7e-09 65.1 158 29.7
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.3e-08 63.9 161 30.4
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 1.3e-08 63.9 147 32.7
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.6e-08 63.5 139 30.9
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 1.6e-08 63.5 129 31.8
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.2e-08 63.2 159 29.6
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 2.8e-08 62.8 151 28.5
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 3.7e-08 62.4 157 27.4
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 6.3e-08 61.6 137 32.1
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 6.3e-08 61.6 158 29.1
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 8.2e-08 61.2 142 26.8
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 8.2e-08 61.2 143 32.2
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 1.1e-07 60.8 157 28.0
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 1.1e-07 60.8 152 28.3
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.8e-07 60.1 151 29.1
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 4.1e-07 58.9 156 24.4
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 4.1e-07 58.9 147 28.6
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 4.1e-07 58.9 141 28.4
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 5.3e-07 58.5 143 28.7
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 5.3e-07 58.5 152 27.0
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 6.9e-07 58.2 141 27.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 9.0e-07 57.8 138 31.2
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 9.0e-07 57.8 141 27.7
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 9.0e-07 57.8 145 28.3
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 9.0e-07 57.8 145 28.3
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 1.2e-06 57.4 157 26.8
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.5e-06 57.0 143 29.4
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 2.0e-06 56.6 144 26.4
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 2.6e-06 56.2 142 27.5
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 2.6e-06 56.2 137 29.9
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 5.9e-06 55.1 142 25.4
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 5.9e-06 55.1 158 25.3
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 1.0e-05 54.3 104 33.7
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.0e-05 54.3 143 26.6
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.0e-05 54.3 143 26.6
Lj6g0008349 Lotus japonicus HOM05D005742 ORTHO05D001888 1.0e-05 54.3 147 23.8


User provided reference genes

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