Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 6.3e-202 707.2 356 100.0
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 2.3e-196 688.7 356 96.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.1e-193 679.9 356 94.4
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.4e-188 662.9 353 92.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.0e-187 659.1 357 92.7
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.0e-184 649.0 356 91.0
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 8.9e-180 633.6 356 88.8
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.5e-179 632.9 368 87.2
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 3.0e-175 618.6 378 84.7
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 4.3e-174 614.8 358 87.4
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.6e-173 612.8 356 86.8
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.6e-168 596.3 380 80.8
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.6e-155 552.4 356 79.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 5.3e-148 528.1 347 78.4
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 9.3e-145 517.3 329 79.3
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.7e-144 515.8 356 74.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.3e-143 513.5 355 74.6
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.7e-143 513.1 330 79.1
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.9e-142 509.6 355 73.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 2.5e-142 509.2 354 74.3
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 7.3e-142 507.7 343 74.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 4.8e-141 505.0 327 77.4
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 6.2e-141 504.6 339 74.0
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 8.1e-141 504.2 288 87.5
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.8e-140 503.1 335 76.1
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.4e-140 502.7 368 72.3
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 4.0e-140 501.9 326 77.0
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 5.3e-140 501.5 307 80.1
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.9e-140 501.1 355 70.7
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 6.9e-140 501.1 383 69.5
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 3.4e-139 498.8 322 78.3
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.4e-139 498.8 347 73.5
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.8e-139 498.0 347 73.8
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 7.6e-139 497.7 327 77.4
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 3.8e-138 495.4 305 78.0
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.9e-138 495.0 354 70.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.4e-137 493.4 311 77.8
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.4e-137 493.4 356 71.9
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.9e-137 493.0 321 76.6
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.2e-137 492.3 315 77.5
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.2e-136 490.3 339 74.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.1e-136 489.6 311 77.2
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 7.9e-136 487.6 311 77.2
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.8e-135 486.5 325 77.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.8e-135 486.5 311 75.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 3.0e-135 485.7 320 75.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 3.0e-135 485.7 310 77.4
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 3.0e-135 485.7 326 74.2
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.9e-135 485.3 288 82.3
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 5.1e-135 485.0 303 78.5
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 8.7e-135 484.2 314 75.2
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.9e-134 483.0 332 73.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.5e-134 482.6 329 74.8
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 4.3e-134 481.9 355 69.9
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 7.4e-134 481.1 307 77.2
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 9.6e-134 480.7 318 74.2
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 9.6e-134 480.7 309 77.3
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.6e-133 479.9 336 72.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.1e-133 479.6 307 77.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 4.8e-133 478.4 317 75.7
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 8.1e-133 477.6 308 76.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.1e-132 475.7 303 76.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 4.0e-132 475.3 300 76.0
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.5e-131 473.4 372 67.2
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.5e-131 473.4 306 74.8
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.6e-131 472.6 324 70.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.3e-130 470.3 319 72.7
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.7e-130 469.9 312 74.7
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 3.8e-130 468.8 308 75.0
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.1e-129 467.2 345 69.3
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 7.1e-129 464.5 320 71.9
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.6e-128 463.4 331 70.4
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.7e-128 462.6 311 72.3
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 6.0e-128 461.5 312 73.1
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 2.3e-127 459.5 314 72.3
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 6.7e-127 458.0 311 72.3
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 3.3e-126 455.7 323 70.0
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.7e-126 454.9 318 73.9
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.3e-125 453.8 347 67.7
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 8.2e-125 451.1 308 73.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-124 450.7 356 65.2
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-124 450.7 356 65.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.3e-119 433.7 276 78.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-118 430.6 395 59.5
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.8e-117 426.0 342 66.1
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.2e-115 420.6 275 75.3
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.2e-114 416.4 273 75.1
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.3e-110 402.5 278 69.8
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 6.9e-108 394.8 270 73.7
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.2e-106 389.8 329 61.4
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.1e-102 377.5 270 70.7
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 6.3e-101 371.7 268 70.9
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.1e-100 370.9 303 60.7
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.8e-100 370.2 236 72.9
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 5.9e-99 365.2 304 58.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.2e-96 357.5 317 63.1
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 6.1e-96 355.1 237 75.5
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 6.3e-93 345.1 237 72.6
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.4e-92 343.2 355 54.1
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.7e-91 339.7 201 81.1
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.0e-90 337.8 271 64.2
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.3e-90 337.4 205 80.5
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.7e-90 337.0 314 54.8
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 8.3e-85 318.2 346 52.0
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.5e-81 307.4 200 72.0
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.2e-81 305.8 311 53.7
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.7e-80 303.1 194 80.4
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.2e-77 293.5 351 47.9
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.4e-68 264.2 217 61.3
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-62 243.8 147 79.6
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.2e-59 234.6 197 62.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.6e-57 225.7 131 80.9
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 9.5e-57 224.9 286 44.8
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 3.4e-54 216.5 130 85.4
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 3.4e-54 216.5 130 85.4
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 5.4e-52 209.1 247 48.6
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 3.5e-51 206.5 126 83.3
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.1e-49 201.4 161 64.0
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.5e-49 200.3 119 80.7
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 8.1e-48 195.3 120 75.8
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 3.4e-46 189.9 137 67.9
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.6e-46 188.7 120 76.7
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.7e-45 186.4 196 54.1
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 4.1e-44 183.0 315 35.9
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 3.5e-43 179.9 153 69.3
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.0e-39 166.4 160 59.4
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 4.2e-36 156.4 86 88.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 4.0e-23 113.2 116 53.4
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 5.8e-22 109.4 118 50.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.3e-18 97.4 80 67.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 2.1e-16 90.9 70 67.1
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.2e-16 89.4 72 61.1
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.5e-14 84.7 79 57.0
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.2e-13 80.9 110 42.7
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 6.5e-13 79.3 140 38.6
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 4.2e-12 76.6 82 51.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 5.1e-10 69.7 66 59.1
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 8.7e-10 68.9 35 88.6
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 3.3e-09 67.0 149 36.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 2.8e-08 63.9 92 43.5
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 6.3e-08 62.8 55 67.3
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 4.1e-07 60.1 43 76.7
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 3.4e-06 57.0 53 60.4


User provided reference genes

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