Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 6.4e-129 464.2 245 100.0
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 7.6e-122 440.7 241 94.6
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 3.0e-118 428.7 241 92.1
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.4e-114 415.2 241 90.0
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-111 406.8 241 88.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 6.0e-111 404.4 240 87.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 7.9e-111 404.1 241 88.0
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.3e-110 402.5 241 87.6
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.3e-110 402.5 241 86.7
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.3e-110 402.5 241 87.6
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.3e-110 402.5 241 86.7
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.2e-104 382.1 241 82.2
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.7e-84 316.6 239 69.0
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.3e-69 265.8 170 81.2
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 2.7e-66 256.1 244 54.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.5e-64 249.6 244 55.3
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 2.5e-64 249.6 238 54.2
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.5e-64 248.4 240 55.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 8.8e-62 241.1 237 54.9
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 8.8e-62 241.1 237 55.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.2e-61 240.7 242 52.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.5e-61 240.4 243 53.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.0e-61 240.0 244 52.9
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.6e-61 239.6 243 51.4
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 2.6e-61 239.6 241 55.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 5.7e-61 238.4 241 53.1
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 7.5e-61 238.0 244 52.5
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.8e-61 237.7 240 53.3
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 9.8e-61 237.7 233 54.5
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.3e-60 237.3 241 51.9
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.8e-60 236.1 244 52.9
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.1e-59 234.2 238 52.5
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.4e-59 233.8 240 53.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.8e-59 233.4 243 51.4
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.8e-59 233.4 240 53.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.4e-59 233.0 241 52.7
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.4e-59 233.0 247 52.2
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.1e-59 232.6 243 51.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.1e-59 232.6 244 52.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 3.1e-59 232.6 242 50.4
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.1e-59 232.3 244 50.8
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.1e-59 232.3 240 52.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.2e-58 230.7 241 52.3
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.2e-58 230.7 244 50.8
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-58 230.3 248 52.0
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.7e-58 229.6 241 51.9
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 4.5e-58 228.8 237 51.5
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 7.7e-58 228.0 238 52.1
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.9e-57 226.1 237 53.2
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 5.0e-57 225.3 239 53.6
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.0e-57 225.3 258 46.5
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.5e-56 223.8 241 49.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 2.5e-56 223.0 221 55.7
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.6e-55 220.3 238 53.4
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.6e-55 220.3 244 50.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.8e-54 216.9 243 48.6
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.8e-54 216.9 243 48.6
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 3.0e-54 216.1 243 48.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.7e-52 209.1 241 49.0
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.9e-52 208.8 235 47.7
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 4.9e-52 208.8 237 46.4
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.1e-51 207.6 243 46.9
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.2e-50 204.1 221 48.9
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.0e-50 203.4 236 47.9
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 2.0e-50 203.4 196 51.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 5.9e-50 201.8 206 52.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 7.8e-50 201.4 201 51.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.3e-49 200.7 220 50.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.9e-49 199.5 270 43.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 5.0e-49 198.7 196 53.6
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 5.0e-49 198.7 241 48.1
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.1e-48 197.6 234 48.3
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 6.1e-47 191.8 240 43.3
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.8e-46 190.3 208 47.6
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 6.8e-46 188.3 241 43.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.5e-45 187.2 234 47.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.5e-45 187.2 241 41.9
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.0e-45 186.8 251 41.0
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.4e-45 186.0 194 49.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 5.7e-45 185.3 193 48.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.5e-45 184.9 238 42.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 2.2e-44 183.3 197 49.7
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.1e-43 181.0 187 51.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.4e-43 179.9 210 46.7
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 4.6e-42 175.6 294 39.1
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.9e-42 175.3 246 45.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.0e-41 174.5 240 42.1
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.7e-41 173.7 238 41.6
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.9e-41 172.6 197 48.2
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 8.6e-41 171.4 241 40.2
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 5.6e-40 168.7 205 46.3
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 5.6e-40 168.7 187 49.7
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-39 166.0 236 41.5
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 5.2e-38 162.2 169 49.1
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 9.8e-37 157.9 242 40.1
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-35 154.1 240 38.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.2e-35 151.4 247 38.9
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.6e-34 149.1 197 47.7
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.6e-34 149.1 244 38.5
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 6.0e-34 148.7 237 37.1
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.0e-34 148.7 196 43.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-32 142.9 235 38.3
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 7.3e-32 141.7 242 34.7
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.6e-29 133.3 245 33.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 3.4e-29 132.9 228 39.5
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 6.0e-26 122.1 243 34.6
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 3.0e-25 119.8 241 32.8
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-25 119.4 238 32.4
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-24 117.5 240 32.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 9.5e-24 114.8 109 56.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-23 113.6 207 35.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.4e-22 110.2 236 33.9
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 4.4e-21 105.9 112 53.6
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.9e-20 103.2 111 48.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.1e-19 101.3 183 38.8
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.9e-19 100.5 112 49.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.6e-18 97.4 104 49.0
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.5e-18 96.3 240 32.9
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.8e-18 95.1 150 36.7
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.6e-17 92.0 106 46.2
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 6.6e-17 92.0 103 47.6
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 8.7e-17 91.7 110 46.4
CARHR294490 Cardamine hirsuta HOM05D005414 ORTHO05D006844 2.1e-15 87.0 56 82.1
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 6.9e-14 82.0 112 41.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 2.6e-13 80.1 209 27.8
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.9e-11 73.9 167 36.5
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.2e-10 71.2 108 39.8
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.9e-09 66.2 150 32.7
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 5.1e-09 65.9 125 32.8
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 5.1e-09 65.9 120 33.3
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-08 62.4 146 28.8
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-07 60.5 117 29.9
CARHR026570 Cardamine hirsuta HOM05D005414 ORTHO05D006844 2.4e-06 57.0 35 80.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-06 56.2 71 43.7


User provided reference genes

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