Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.6e-46 188.0 100 100.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 7.5e-44 180.3 100 95.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.6e-38 162.5 97 91.8
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.1e-38 160.2 96 90.6
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.6e-36 155.2 98 83.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.9e-35 151.8 97 87.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 5.4e-34 147.5 90 86.7
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 7.1e-34 147.1 98 83.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 9.2e-34 146.7 92 84.8
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-32 143.3 95 81.1
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-32 143.3 91 83.5
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.7e-32 142.5 100 81.0
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.9e-32 141.4 89 83.1
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.1e-32 141.0 89 82.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 8.7e-32 140.2 104 78.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 8.7e-32 140.2 95 82.1
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-31 139.0 99 77.8
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.9e-31 139.0 90 84.4
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 5.6e-31 137.5 102 79.4
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.3e-31 137.1 89 77.5
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 9.6e-31 136.7 93 80.6
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 9.6e-31 136.7 99 76.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-29 133.3 89 82.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 3.1e-29 131.7 93 78.5
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 9.0e-29 130.2 94 79.8
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-28 129.8 99 71.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.4e-28 128.3 97 73.2
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 5.8e-28 127.5 65 93.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 7.6e-28 127.1 67 91.0
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 7.6e-28 127.1 89 73.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-27 126.3 64 93.8
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-27 126.3 64 93.8
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 2.2e-27 125.6 94 72.3
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 8.4e-27 123.6 90 73.3
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.4e-26 122.1 84 72.6
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.4e-26 122.1 89 70.8
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.2e-26 121.7 81 74.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.2e-26 121.7 88 71.6
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 7.1e-26 120.6 97 70.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 9.3e-26 120.2 85 72.9
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 9.3e-26 120.2 79 75.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.6e-25 119.4 84 70.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.1e-25 119.0 86 68.6
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.1e-25 119.0 85 68.2
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 3.5e-25 118.2 89 68.5
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 6.0e-25 117.5 89 69.7
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 6.0e-25 117.5 86 69.8
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.0e-25 117.5 103 61.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 7.8e-25 117.1 88 70.5
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.0e-24 116.7 86 69.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.0e-24 116.7 81 72.8
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.0e-24 116.7 85 70.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.0e-24 116.7 76 73.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.3e-24 116.3 84 70.2
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.7e-24 115.9 85 67.1
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 89 67.4
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.3e-24 115.5 79 74.7
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.3e-24 115.5 79 74.7
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 84 66.7
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.3e-24 115.5 88 64.8
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.3e-24 115.5 98 64.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.0e-24 115.2 84 69.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.0e-24 115.2 86 69.8
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.0e-24 115.2 82 72.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.9e-24 114.8 89 66.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.9e-24 114.8 84 70.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.1e-24 114.4 79 73.4
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 5.1e-24 114.4 89 66.3
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 5.1e-24 114.4 87 67.8
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 6.6e-24 114.0 62 83.9
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 8.7e-24 113.6 67 76.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 8.7e-24 113.6 89 66.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-23 113.2 94 62.8
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.1e-23 113.2 89 65.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.1e-23 113.2 85 65.9
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.1e-23 113.2 90 63.3
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.5e-23 112.8 76 71.1
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.9e-23 112.5 87 64.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 79 73.4
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 2.5e-23 112.1 68 79.4
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.5e-23 112.1 87 64.4
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.3e-23 111.7 89 61.8
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.3e-23 111.7 89 61.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.3e-23 111.7 88 65.9
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.3e-23 111.7 88 62.5
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 4.3e-23 111.3 89 66.3
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 7.3e-23 110.5 91 63.7
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 7.3e-23 110.5 69 76.8
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 9.6e-23 110.2 79 72.2
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.3e-22 109.8 95 61.1
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.6e-22 109.4 100 58.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.6e-22 109.4 85 67.1
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.1e-22 109.0 73 71.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.8e-22 108.6 89 61.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.8e-22 108.6 87 64.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 4.8e-22 107.8 66 72.7
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-21 106.3 78 67.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-21 106.3 78 67.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.8e-21 105.9 71 71.8
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.8e-21 105.9 89 59.6
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.4e-21 105.5 87 59.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.4e-21 105.5 72 69.4
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.4e-21 105.5 62 74.2
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.4e-21 105.5 95 57.9
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 4.0e-21 104.8 66 75.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 4.0e-21 104.8 87 59.8
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 5.3e-21 104.4 71 70.4
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.9e-21 104.0 72 68.1
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.9e-21 104.0 65 69.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 9.0e-21 103.6 80 65.0
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 9.0e-21 103.6 83 66.3
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 9.0e-21 103.6 71 64.8
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.2e-20 103.2 112 55.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-20 103.2 83 59.0
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.0e-20 102.4 68 69.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 3.4e-20 101.7 78 65.4
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.4e-20 101.7 66 71.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.4e-20 101.7 66 75.8
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 4.5e-20 101.3 71 69.0
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 7.6e-20 100.5 120 50.0
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 9.9e-20 100.1 63 74.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.3e-19 99.8 62 71.0
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.7e-19 99.4 78 64.1
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.7e-19 99.4 64 67.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.2e-19 99.0 67 70.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.8e-19 98.2 78 61.5
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.4e-19 97.1 81 60.5
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-18 96.3 61 73.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-18 96.3 61 73.8
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.9e-18 95.9 92 56.5
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.2e-18 94.7 61 68.9
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 7.1e-18 94.0 89 56.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 7.1e-18 94.0 89 56.2
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 9.3e-18 93.6 61 68.9
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.6e-17 92.8 75 57.3
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 6.0e-17 90.9 75 60.0
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.3e-16 89.7 63 66.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.8e-16 89.4 85 52.9
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.9e-16 88.2 89 51.7
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.9e-16 88.2 62 66.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-15 86.7 62 64.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-15 86.3 62 64.5
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.5e-15 85.5 78 51.3
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 3.3e-15 85.1 73 58.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.3e-15 84.7 69 59.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 5.6e-15 84.3 91 49.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 7.4e-15 84.0 73 57.5
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.3e-14 83.2 64 59.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.1e-14 82.4 61 63.9
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.0e-13 78.2 56 64.3
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 4.9e-11 71.2 57 75.4
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.9e-11 71.2 59 61.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.5e-11 70.9 60 51.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.2e-09 66.6 72 47.2
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.0e-08 62.0 35 80.0
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 8.7e-08 60.5 43 67.4


User provided reference genes

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