Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.3e-153 546.6 315 100.0
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.6e-140 503.1 320 89.7
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.5e-122 443.4 325 78.2
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.2e-119 433.7 319 81.2
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.2e-115 418.3 322 78.6
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-112 410.2 322 74.2
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 7.8e-111 404.4 324 74.1
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-103 380.6 328 70.7
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-102 376.7 321 69.5
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-102 376.7 321 69.5
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-102 376.7 321 69.5
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.3e-101 372.5 321 70.1
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 2.9e-97 359.4 315 64.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.5e-95 352.4 318 63.5
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-92 343.2 315 60.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.1e-91 340.9 326 65.6
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.0e-86 324.3 315 58.1
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 3.2e-80 302.8 330 60.3
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 6.0e-79 298.5 340 56.8
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-79 298.5 340 56.8
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 6.0e-79 298.5 340 56.8
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.1e-77 294.3 346 59.2
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.8e-73 279.3 351 56.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 4.9e-73 278.9 341 56.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 6.4e-73 278.5 339 53.7
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-72 276.9 339 56.0
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.2e-72 276.2 355 56.9
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.6e-71 273.9 349 55.9
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.1e-71 273.5 337 53.7
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.7e-71 273.1 330 57.9
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-71 271.9 337 53.7
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.0e-70 271.2 357 54.3
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.1e-70 268.9 354 55.4
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-67 260.8 357 52.9
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 9.0e-67 258.1 335 53.1
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-66 257.7 338 53.3
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.5e-66 257.3 324 50.3
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.6e-66 256.5 344 54.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 5.8e-66 255.4 335 53.1
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-65 253.8 335 53.1
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.8e-65 252.7 335 53.4
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-65 251.5 350 52.6
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-65 251.5 350 52.6
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 8.4e-65 251.5 350 52.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-60 237.7 355 45.6
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.1e-60 236.9 355 45.1
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 4.8e-60 235.7 348 47.1
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-59 234.6 181 69.1
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 6.9e-59 231.9 354 46.9
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.2e-58 231.1 355 45.1
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.0e-58 230.3 334 49.7
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.4e-58 229.6 364 44.5
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 4.5e-58 229.2 355 44.5
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 4.5e-58 229.2 352 50.3
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 5.8e-58 228.8 337 48.4
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.6e-58 228.4 345 47.8
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.2e-57 226.9 351 44.2
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.9e-57 226.5 351 47.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 2.9e-57 226.5 335 47.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.9e-57 226.5 349 45.0
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 3.8e-57 226.1 354 46.9
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.9e-57 225.7 336 47.6
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 1.1e-56 224.6 352 44.9
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 5.5e-56 222.2 270 55.6
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 5.5e-56 222.2 356 44.9
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 9.3e-56 221.5 330 44.2
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 9.3e-56 221.5 354 43.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.7e-55 219.9 347 48.4
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.7e-55 219.9 345 48.7
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 3.5e-55 219.5 333 48.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 7.9e-55 218.4 341 44.0
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.3e-54 217.6 347 48.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.9e-54 216.1 361 42.1
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.5e-53 214.2 359 45.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.3e-53 212.6 338 46.4
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 7.4e-53 211.8 332 43.1
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 7.4e-53 211.8 349 49.3
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 7.4e-53 211.8 355 41.4
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 9.6e-53 211.5 343 49.6
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.3e-52 211.1 344 43.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.1e-52 210.3 340 45.0
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 2.8e-52 209.9 332 47.0
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 3.7e-52 209.5 360 41.1
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.8e-52 209.1 349 47.0
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.1e-51 208.0 342 45.9
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.4e-51 207.6 359 43.5
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.8e-51 207.2 305 48.5
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.8e-51 207.2 361 44.9
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.4e-51 206.8 351 46.7
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 4.0e-51 206.1 372 40.9
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 5.3e-51 205.7 366 40.4
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.4e-50 203.0 365 41.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.0e-49 201.4 264 51.1
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.0e-49 201.4 341 44.9
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 1.0e-49 201.4 342 43.3
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.9e-49 199.9 364 41.8
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 4.9e-49 199.1 354 40.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 4.9e-49 199.1 352 43.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 8.4e-49 198.4 324 45.4
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.9e-48 197.2 318 43.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.5e-48 196.8 354 42.4
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 4.2e-48 196.1 348 41.4
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.2e-47 194.5 344 38.7
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.2e-47 194.5 332 47.0
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.6e-47 194.1 360 40.3
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 2.1e-47 193.7 335 42.7
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 6.0e-47 192.2 335 44.8
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 8.7e-46 188.3 368 44.3
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.5e-45 187.6 358 41.9
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.3e-45 186.0 277 47.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.3e-44 184.5 350 44.6
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.6e-44 184.1 337 44.5
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.6e-44 184.1 365 43.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.7e-44 183.0 324 43.2
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.8e-44 182.6 337 45.1
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.1e-43 179.5 328 43.6
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 5.3e-43 179.1 266 46.6
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 9.0e-43 178.3 342 39.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.5e-42 177.6 365 41.4
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.6e-42 176.8 329 44.4
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.5e-42 176.0 332 42.8
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 5.9e-42 175.6 345 37.1
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.2e-41 173.7 257 42.8
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 2.2e-41 173.7 335 45.4
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.2e-39 167.9 334 40.1
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.2e-39 167.9 329 41.6
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 2.7e-39 166.8 327 42.5
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 2.7e-39 166.8 335 39.1
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 3.6e-39 166.4 340 38.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 6.1e-39 165.6 339 38.1
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.8e-38 164.1 330 42.4
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.8e-38 161.8 320 36.6
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.1e-37 161.4 345 45.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.3e-37 159.5 320 43.1
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.2e-36 157.1 314 37.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.7e-36 156.4 333 40.2
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 4.8e-36 156.0 344 38.1
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.2e-34 151.4 281 40.2
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.6e-34 150.2 348 35.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 2.2e-33 147.1 352 41.8
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 6.5e-33 145.6 343 36.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.1e-32 144.8 234 41.9
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 5.5e-32 142.5 335 35.8
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.5e-32 142.5 360 38.1
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.7e-31 140.2 177 49.7
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 4.7e-31 139.4 331 35.3
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 3.0e-30 136.7 303 36.0
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 3.9e-30 136.3 370 35.1
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 6.7e-30 135.6 271 42.1
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 6.7e-30 135.6 332 36.7
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 2.6e-29 133.7 359 39.8
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.2e-28 130.6 345 30.4
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 2.8e-28 130.2 358 35.5
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 9.1e-27 125.2 95 76.8
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.5e-26 124.4 333 36.6
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 4.5e-26 122.9 321 38.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 8.5e-25 118.6 403 29.3
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.1e-24 118.2 237 37.6
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.4e-24 117.9 328 34.8
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.7e-23 113.6 221 45.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.6e-23 113.2 322 37.0
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.8e-22 110.9 317 36.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 6.7e-22 109.0 97 63.9
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.5e-21 107.8 416 28.8
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.3e-20 104.8 250 38.0
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 6.3e-20 102.4 322 32.3
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-19 100.5 51 90.2
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 5.3e-19 99.4 338 37.0
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 4.7e-15 86.3 91 57.1
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 4.7e-15 86.3 113 47.8
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 6.7e-14 82.4 163 42.3
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.5e-13 81.3 162 35.8
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 2.8e-12 77.0 193 33.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.0e-11 72.4 286 29.4
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.5e-08 63.9 358 34.4
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.2e-07 61.6 363 24.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.0e-06 56.6 292 27.4
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.0e-06 56.6 336 24.4
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 5.2e-06 56.2 291 24.1
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 6.8e-06 55.8 286 25.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 6.8e-06 55.8 202 29.2
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.8e-06 55.5 279 25.4


User provided reference genes

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