Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 2.7e-35 151.4 73 100.0
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 4.4e-33 144.1 73 94.5
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 2.2e-29 131.7 77 85.7
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 5.0e-29 130.6 74 87.8
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 3.2e-28 127.9 77 81.8
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 3.2e-28 127.9 77 84.4
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 4.4e-25 117.5 75 76.0
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 4.4e-25 117.5 75 76.0
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 4.4e-25 117.5 75 76.0
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.7e-24 115.5 77 77.9
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 8.3e-24 113.2 60 86.7
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 1.6e-22 109.0 61 83.6
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.6e-22 109.0 61 83.6
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 3.6e-19 97.8 64 68.8
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.4e-18 95.9 67 70.1
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.4e-18 95.9 67 68.7
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.4e-18 95.9 67 68.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 2.3e-18 95.1 67 68.7
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 4.0e-18 94.4 64 65.6
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 4.0e-18 94.4 67 67.2
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 6.8e-18 93.6 64 70.3
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 8.9e-18 93.2 71 63.4
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 8.9e-18 93.2 64 67.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.2e-17 92.8 66 66.7
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 1.5e-17 92.4 65 67.7
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 2.0e-17 92.0 64 67.2
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 2.0e-17 92.0 77 63.6
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 2.6e-17 91.7 65 64.6
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 3.4e-17 91.3 67 65.7
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 3.4e-17 91.3 68 64.7
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 4.4e-17 90.9 64 68.8
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 4.4e-17 90.9 58 74.1
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 4.4e-17 90.9 64 65.6
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 4.4e-17 90.9 63 68.3
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 7.5e-17 90.1 70 62.9
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 7.5e-17 90.1 65 67.7
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 7.5e-17 90.1 67 65.7
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 9.8e-17 89.7 60 68.3
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 2.2e-16 88.6 57 73.7
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 2.2e-16 88.6 76 60.5
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 2.8e-16 88.2 66 65.2
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 3.7e-16 87.8 67 62.7
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 3.7e-16 87.8 77 57.1
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 3.7e-16 87.8 60 65.0
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 4.9e-16 87.4 59 66.1
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 4.9e-16 87.4 60 66.7
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 6.3e-16 87.0 63 65.1
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 6.3e-16 87.0 62 67.7
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 6.3e-16 87.0 66 63.6
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 1.1e-15 86.3 63 63.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 1.4e-15 85.9 69 59.4
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.4e-15 85.9 66 63.6
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.4e-15 85.9 67 61.2
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.8e-15 85.5 66 63.6
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.8e-15 85.5 63 65.1
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 1.8e-15 85.5 63 66.7
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 3.2e-15 84.7 64 62.5
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 4.1e-15 84.3 63 65.1
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 5.4e-15 84.0 67 59.7
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 7.0e-15 83.6 59 64.4
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 7.0e-15 83.6 73 57.5
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 7.0e-15 83.6 67 59.7
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.6e-14 82.4 54 70.4
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 2.0e-14 82.0 60 61.7
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 2.7e-14 81.6 75 58.7
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 2.7e-14 81.6 78 53.8
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 3.5e-14 81.3 76 60.5
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 5.9e-14 80.5 56 66.1
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 7.8e-14 80.1 55 67.3
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 7.8e-14 80.1 54 68.5
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.0e-13 79.7 72 56.9
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.0e-13 79.7 55 67.3
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.0e-13 79.7 56 69.6
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 1.3e-13 79.3 61 62.3
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.3e-13 79.3 65 60.0
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 1.7e-13 79.0 58 62.1
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.7e-13 79.0 55 65.5
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 2.3e-13 78.6 55 65.5
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 2.9e-13 78.2 65 55.4
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 2.9e-13 78.2 67 59.7
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 8.6e-13 76.6 65 60.0
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 8.6e-13 76.6 58 63.8
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.5e-12 75.9 68 54.4
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.9e-12 75.5 71 56.3
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 4.3e-12 74.3 79 51.9
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 7.3e-12 73.6 51 64.7
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 2.3e-10 68.6 105 40.0
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 1.7e-08 62.4 42 69.0
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 4.9e-08 60.8 40 70.0
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 9.2e-07 56.6 51 54.9


User provided reference genes

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