Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.1e-102 376.7 207 100.0
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.0e-100 368.2 207 91.8
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 3.3e-94 348.6 208 87.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.3e-93 344.4 207 86.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.6e-91 339.0 208 86.1
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 4.2e-89 331.6 208 83.7
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 4.2e-89 331.6 208 83.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-87 325.9 208 82.7
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-87 325.9 208 82.7
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.3e-87 325.9 208 82.7
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.9e-87 325.1 209 85.6
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.3e-86 322.0 211 83.4
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.3e-86 321.6 211 82.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-85 320.1 211 82.9
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-85 320.1 211 82.9
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-85 320.1 211 82.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-85 319.7 211 83.4
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-85 319.7 211 83.4
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.7e-85 319.7 211 83.4
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.7e-85 318.5 211 82.5
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-84 317.0 211 82.9
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-84 317.0 211 82.9
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.5e-83 311.6 207 83.1
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-82 310.1 206 82.0
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.2e-81 305.4 194 82.0
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-52 210.7 210 56.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.1e-52 207.6 219 53.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 3.7e-45 185.7 210 51.9
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 9.2e-44 181.0 211 52.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 4.5e-43 178.7 210 50.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.3e-41 172.2 213 49.3
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.3e-41 172.2 202 49.5
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.7e-40 168.7 176 61.4
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.0e-39 167.5 210 48.1
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.4e-39 167.2 212 47.6
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 50.0
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.3e-39 166.4 222 48.6
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 2.3e-39 166.4 212 50.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.2e-39 165.2 212 49.1
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.2e-39 165.2 212 49.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 6.8e-39 164.9 208 47.6
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.9e-39 164.5 199 49.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.2e-38 164.1 219 47.9
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.6e-38 162.9 226 46.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.4e-38 162.5 234 44.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.5e-38 161.4 185 49.7
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 9.8e-38 161.0 207 48.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.3e-37 160.6 213 43.2
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-37 160.2 212 48.1
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.4e-36 157.1 192 50.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.4e-36 157.1 202 47.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 3.2e-36 156.0 233 42.5
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.1e-36 155.6 214 43.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.4e-36 155.2 217 44.7
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 5.4e-36 155.2 211 45.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 5.4e-36 155.2 197 47.7
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.2e-36 154.5 197 47.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.2e-36 154.5 217 45.2
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.2e-35 154.1 197 47.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.2e-35 154.1 209 45.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.6e-35 153.7 215 45.6
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.0e-35 153.3 178 50.6
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.7e-35 152.9 213 46.0
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.0e-35 151.8 217 44.2
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.0e-34 151.0 205 46.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-34 151.0 215 44.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-34 151.0 215 45.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.0e-34 151.0 214 46.3
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.3e-34 150.6 208 46.6
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.3e-34 150.6 196 46.9
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.3e-34 150.6 229 43.7
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.9e-34 149.1 208 47.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.0e-34 148.7 197 46.2
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 6.6e-34 148.3 205 46.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.5e-33 147.1 221 44.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.9e-33 146.7 218 45.4
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.3e-33 146.0 218 47.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.3e-33 144.8 222 50.9
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 9.5e-33 144.4 198 47.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 9.5e-33 144.4 208 45.2
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 224 45.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-32 143.7 210 45.2
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.1e-32 143.3 209 44.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.8e-32 142.9 212 45.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.8e-32 142.9 221 43.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.8e-32 142.9 215 42.3
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.8e-32 142.9 213 46.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-32 142.5 211 43.1
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-32 142.5 211 43.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.6e-32 142.5 251 41.0
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-31 140.2 210 40.5
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.2e-31 138.7 232 44.4
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 5.2e-31 138.7 213 43.7
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.8e-31 138.3 195 45.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 6.8e-31 138.3 213 43.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-30 136.7 217 46.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-30 136.7 207 41.5
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 3.4e-30 136.0 208 40.9
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.8e-30 135.2 214 38.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.5e-30 134.8 220 43.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-29 133.7 190 43.7
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.7e-29 133.7 212 41.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.7e-29 132.5 217 41.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.9e-29 132.1 228 42.1
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.9e-28 130.2 194 44.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.9e-28 130.2 232 40.5
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-28 129.8 193 44.0
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.2e-28 129.4 222 42.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.2e-28 129.4 226 38.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 7.0e-28 128.3 225 39.1
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 9.2e-28 127.9 207 43.0
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-27 127.5 190 43.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.1e-27 126.7 188 43.6
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.5e-27 125.9 211 42.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 4.6e-27 125.6 204 39.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.0e-27 125.2 174 46.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.8e-27 124.8 174 46.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.0e-26 124.4 225 40.4
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-26 124.0 187 40.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.7e-26 123.6 196 43.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 3.9e-26 122.5 202 41.1
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-25 120.9 149 49.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.1e-25 120.9 169 41.4
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.9e-25 120.2 194 40.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.9e-25 120.2 216 38.0
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 7.3e-25 118.2 252 37.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.6e-24 117.1 194 39.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-23 114.4 231 37.2
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.8e-23 111.7 183 42.6
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.8e-23 111.7 236 38.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.2e-22 110.9 180 40.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.5e-22 110.5 204 41.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.5e-22 110.5 194 38.7
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.6e-22 109.8 175 36.6
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 7.5e-22 108.2 161 45.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.2e-21 106.7 260 33.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 6.4e-21 105.1 194 39.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 7.1e-20 101.7 213 35.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.6e-19 100.5 168 39.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-19 99.4 168 39.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 4.6e-19 99.0 220 35.9
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.0e-19 98.6 116 51.7
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.7e-18 97.1 199 37.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.7e-18 97.1 174 39.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-16 90.9 107 52.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.2e-16 90.9 99 48.5
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.8e-16 89.7 206 31.1
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-15 87.8 214 34.1
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.0e-15 85.9 200 33.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.2e-15 85.5 199 33.7
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.6e-14 83.2 198 35.9
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-14 82.8 209 34.4
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 3.4e-14 82.8 209 34.4
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 3.4e-14 82.8 96 47.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.8e-14 82.0 195 35.4
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 7.6e-14 81.6 160 38.8
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.7e-13 80.5 196 33.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.9e-13 79.0 193 35.2
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 4.9e-13 79.0 211 34.1
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 4.9e-13 79.0 211 34.1
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 6.4e-13 78.6 211 33.6
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.4e-12 76.6 181 34.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 3.5e-11 72.8 242 32.6
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-10 70.9 105 38.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.7e-10 70.5 111 40.5
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 8.7e-10 68.2 171 32.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.6e-08 63.9 198 27.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 2.8e-08 63.2 127 37.8
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.4e-07 60.8 87 39.1
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.4e-07 60.1 63 58.7
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.0e-07 59.3 92 42.4
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 1.2e-06 57.8 75 48.0


User provided reference genes

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